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[192824_s_at] DnaJ, prokaryotic heat shock protein

Description F39B2.10 /REP_DB=WormBase Gene ID /WP=CE16015 /TR=O45502 /GB=CAB07390.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=DnaJ, prokaryotic heat shock protein
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 58      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 68      6grp_total > 48      4grp_total > 01      6grp_highest_sub > Cu      6grp_cgc > 17      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4693
1 2 3 4 range
A 1679.3
(-2.8)
P 		1526.9
(-3)
P 		1943.3
(-2.5)
P 		6220.3
(3)
P 		4693
B 1734.9
(-2.9)
P 		1636.8
(-3)
P 		2378.6
(-1.9)
P 		5850.3
(3)
P 		4214
C 1617.9
(-3)
P 		1778.6
(-2.8)
P 		1894.8
(-2.6)
P 		5865
(3)
P 		4247
avr 1677.4
(-3) 		1647.4
(-3) 		2072.2
(-2.4) 		5978.5
(3) 		4331

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1219
1 2 3 4 5 6 range
A 1952.1
(-0.8)
P 		2108.7
(-0)
P 		1504.9
(-3)
P 		1786.9
(-1.6)
P 		1741.2
(-1.8)
P 		2723.5
(3)
P 		1219
B 1940.8
(1.7)
P 		1798.5
(-0.5)
P 		1638.3
(-3)
P 		1998.1
(2.6)
P 		1786.5
(-0.7)
P 		2024.1
(3)
P 		386
C 2621.8
(3)
P 		1855.8
(-1.2)
P 		1796.2
(-1.6)
P 		1537.2
(-3)
P 		1762.5
(-1.8)
P 		2145
(0.4)
P 		1085
avr 2171.6
(1.8) 		1921
(-0.5) 		1646.5
(-3) 		1774.1
(-1.8) 		1763.4
(-1.9) 		2297.5
(3) 		651
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 915
1 2 3 4 range
A 611.4
(-0.1)
P 		331.4
(-3)
P 		508
(-1.2)
P 		910.5
(3)
P 		579
B 553.3
(-1.9)
P 		404.2
(-3)
P 		551.2
(-2)
P 		1246.7
(3)
P 		843
C 535.6
(-2.7)
P 		511.3
(-3)
P 		660.4
(-1.1)
P 		988.9
(3)
P 		478
avr 566.8
(-1.6) 		415.6
(-3) 		573.2
(-1.5) 		1048.7
(3) 		633

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 663
1 2 3 4 5 6 range
A 359.9
(-2.5)
P 		750
(3)
P 		327.7
(-3)
P 		453.2
(-1.2)
P 		525.4
(-0.2)
P 		663.1
(1.8)
P 		422
B 675.3
(1.7)
P 		598.7
(0.4)
P 		397.8
(-3)
P 		529.2
(-0.8)
P 		725.8
(2.5)
P 		754.8
(3)
P 		357
C 971.8
(3)
P 		566.3
(-0.7)
P 		457.2
(-1.7)
P 		309.1
(-3)
P 		570.3
(-0.6)
P 		718.1
(0.7)
P 		663
avr 669
(2.2) 		638.3
(1.6) 		394.2
(-3) 		430.5
(-2.3) 		607.2
(1) 		712
(3) 		318
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192824_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1166
Sequence Type Exemplar sequence
Representative Public ID F39B2.10 NCBI
Target Description F39B2.10 /REP_DB=WormBase Gene ID /WP=CE16015 /TR=O45502 /GB=CAB07390.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=DnaJ, prokaryotic heat shock protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061169(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061169 NCBI Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein) family member (dnj-12) (dnj-12) mRNA, complete cds. 11/11 None
SNAP00000018498 ENSEMBL cdna:SNAP chromosome:CEL140:I:14764927:14766550:1 11/11 None
GENEFINDER00000018510 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14765197:14766550:1 11/11 None
F39B2.10.4 ENSEMBL cdna:known chromosome:CEL140:I:14764976:14767472:1 gene:F39B2.10 11/11 None
F39B2.10.3 ENSEMBL cdna:known chromosome:CEL140:I:14765179:14767472:1 gene:F39B2.10 11/11 None
F39B2.10.2 ENSEMBL cdna:known chromosome:CEL140:I:14765181:14767472:1 gene:F39B2.10 11/11 None
F39B2.10.1 ENSEMBL cdna:known chromosome:CEL140:I:14765182:14767472:1 gene:F39B2.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14765127-14766481(+) 100.0 100.0
Public Domain and Genome References
Gene Title DnaJ, prokaryotic heat shock protein
Gene Symbol dnj-12
Ensembl F39B2.10
Entrez Gene 173341 Entrez gene
SwissProt O45502 EMBL-EBI
WormBase CE16015 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:245686_AT DNAJ heat shock protein, putative at
CHICKEN:GGA.5644.1.S1_S_AT DnaJ (Hsp40) homolog, subfamily A, member 1 gga
CHICKEN:GGA.5644.2.S1_S_AT DnaJ (Hsp40) homolog, subfamily A, member 1 gga
HG-U133_PLUS_2:200881_S_AT DnaJ (Hsp40) homolog, subfamily A, member 1 hs
HG-U133A:200881_S_AT DnaJ (Hsp40) homolog, subfamily A, member 1 hs
HG-U133A_2:200881_S_AT DnaJ (Hsp40) homolog, subfamily A, member 1 hs
HG-U95AV2:276_AT DnaJ (Hsp40) homolog, subfamily A, member 1 hs
HC-G110:276_AT DnaJ (Hsp40) homolog, subfamily A, member 1 hs
HU35KSUBB:RC_F01682_F_AT DnaJ (Hsp40) homolog, subfamily A, member 1 hs
HUGENEFL:L08069_AT DnaJ (Hsp40) homolog, subfamily A, member 1 hs
U133_X3P:G4504510_3P_A_AT DnaJ (Hsp40) homolog, subfamily A, member 1 hs
HG-U133_PLUS_2:200880_AT DnaJ (Hsp40) homolog, subfamily A, member 1 hs
HG-U133A:200880_AT DnaJ (Hsp40) homolog, subfamily A, member 1 hs
HG-U133A_2:200880_AT DnaJ (Hsp40) homolog, subfamily A, member 1 hs
HG-FOCUS:200880_AT DnaJ (Hsp40) homolog, subfamily A, member 1 hs
U133_X3P:HS.94.0.S2_3P_AT DnaJ (Hsp40) homolog, subfamily A, member 1 hs
HG-U95AV2:39118_AT DnaJ (Hsp40) homolog, subfamily A, member 1 hs
MOE430A:1416288_AT DnaJ (Hsp40) homolog, subfamily A, member 1 mm
MOUSE430A_2:1416288_AT DnaJ (Hsp40) homolog, subfamily A, member 1 mm
MOUSE430_2:1416288_AT DnaJ (Hsp40) homolog, subfamily A, member 1 mm
MOUSE430_2:1459835_S_AT DnaJ (Hsp40) homolog, subfamily A, member 1 mm
MOE430B:1459835_S_AT DnaJ (Hsp40) homolog, subfamily A, member 1 mm
MOUSE430_2:1460179_AT DnaJ (Hsp40) homolog, subfamily A, member 1 mm
MOE430A:1460179_AT DnaJ (Hsp40) homolog, subfamily A, member 1 mm
MOUSE430A_2:1460179_AT DnaJ (Hsp40) homolog, subfamily A, member 1 mm
MU11KSUBB:MSA.16087.0_F_AT DnaJ (Hsp40) homolog, subfamily A, member 1 mm
MU11KSUBB:MSA.39913.0_F_AT DnaJ (Hsp40) homolog, subfamily A, member 1 mm
MU11KSUBB:Z31298_S_AT DnaJ (Hsp40) homolog, subfamily A, member 1 mm
MU11KSUBB:MSA.12839.0_F_AT DnaJ (Hsp40) homolog, subfamily A, member 1 mm
MU11KSUBB:MSA.11034.0_F_AT DnaJ (Hsp40) homolog, subfamily A, member 1 mm
MG-U74AV2:97261_AT DnaJ (Hsp40) homolog, subfamily A, member 1 mm
MG-U74BV2:105951_AT DnaJ (Hsp40) homolog, subfamily A, member 1 (Dnaja1), mRNA mm
MOUSE430_2:1442506_AT DnaJ (Hsp40) homolog, subfamily A, member 1 (Dnaja1), mRNA mm
MOE430B:1442506_AT DnaJ (Hsp40) homolog, subfamily A, member 1 (Dnaja1), mRNA mm
MOE430B:1458397_AT DnaJ (Hsp40) homolog, subfamily A, member 1 (Dnaja1), mRNA mm
MOUSE430_2:1458397_AT DnaJ (Hsp40) homolog, subfamily A, member 1 (Dnaja1), mRNA mm
MU19KSUBB:TC31352_AT DnaJ (Hsp40) homolog, subfamily A, member 1 (Dnaja1), mRNA mm
RT-U34:U53922_AT DnaJ-like protein rn
RG-U34A:U53922_AT DnaJ-like protein rn
RAE230A:1368852_AT DnaJ-like protein rn
RAT230_2:1368852_AT DnaJ-like protein rn
RAE230A:1398819_AT DnaJ-like protein rn
RAT230_2:1398819_AT DnaJ-like protein rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6457 protein folding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07390 Hypothetical protein F39B2.10 [Caenorhabditis elegans] ref|NP_493570.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-12) [Caenorhabditis elegans] 0.0
blast CAE72578 Hypothetical protein CBG19766 [Caenorhabditis briggsae] 1.0E-175
Protein Domains
Database ID Description E-Value
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 1.00000003137439E-22
Pfam IPR002939 EMBL-EBI Chaperone DnaJ, C-terminal 3.1E-10
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 3.5E-37
Pfam IPR001305 EMBL-EBI DnaJ central domain (CXXCXGXG) 1.8E-29
Pfam IPR002939 EMBL-EBI Chaperone DnaJ, C-terminal 3.1E-10
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 3.5E-37
Pfam IPR001305 EMBL-EBI DnaJ central domain (CXXCXGXG) 1.8E-29
Sequence
Target Sequence 
>C. ELEGANS:192824_S_AT
aagttggaatcacgcctggcatgaaagatggcgagaagtttgtgttcgaaggaaaaggag
acgaagtgatcggtattgagaagcctggagactttgtagttgtgctcgacgaggttgaac
acgagaaattcgtccgaaaaggcgataatctgattattcaacacaatatcgatctttccg
aggctctgtgcggatttgtgcgaacaatcagtacacttgatggtcgaacaattttctatc
gtgttcttcctggagaggttattgctcatgccgatgttaaagtgatccacaacgagggaa
tgccaatgcgtcgagcatcatctgataaaggagatcttctcgtacagttcgatgtgaaat
tccccgataaaattaatccagatgccgcgaagaagctagccgatttactgcctggaaaga
gagaagaaatcattgatgaagacgcggaagtcgttgagctgaccgagttagatccacaag
catctcgcaggaatttcgctgagcgcgacgactttgaaggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTGGAATCACGCCTGGCATGAA 91 157 641 Antisense
GACTTTGTAGTTGTGCTCGACGAGG 597 371 730 Antisense
AATATCGATCTTTCCGAGGCTCTGT 527 173 805 Antisense
AGGCTCTGTGCGGATTTGTGCGAAC 567 53 821 Antisense
TTTTCTATCGTGTTCTTCCTGGAGA 360 677 872 Antisense
GAGAGGTTATTGCTCATGCCGATGT 448 395 893 Antisense
GGAGATCTTCTCGTACAGTTCGATG 129 519 970 Antisense
AGAAGCTAGCCGATTTACTGCCTGG 655 71 1031 Antisense
GAGCTGACCGAGTTAGATCCACAAG 244 387 1096 Antisense
GCATCTCGCAGGAATTTCGCTGAGC 686 309 1120 Antisense
GCTGAGCGCGACGACTTTGAAGGAC 676 295 1138 Antisense
Sequence Source Affymetrix Proprietary Database