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[192823_at] Sodium/phosphate transporter protein

Description F41C3.2 /REP_DB=WormBase Gene ID /WP=CE02730 /TR=Q20265 /GB=AAC46809.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Sodium-phosphate transporter protein
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 76      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 97      6grp_total > 77      4grp_total > 04      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1217
1 2 3 4 range
A 605.8
(-2.4)
P 		496.7
(-3)
P 		514.7
(-2.9)
P 		1594.2
(3)
P 		1098
B 755.8
(-0.9)
P 		377.4
(-3)
P 		492.7
(-2.3)
P 		1438.5
(3)
P 		1061
C 670.4
(-1.4)
P 		405.1
(-3)
P 		481.1
(-2.5)
P 		1389.1
(3)
P 		984
avr 677.3
(-1.6) 		426.4
(-3) 		496.2
(-2.6) 		1473.9
(3) 		1048

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1090
1 2 3 4 5 6 range
A 766.3
(-2.4)
P 		1062.4
(-0.3)
P 		678.4
(-3)
P 		788.8
(-2.2)
P 		983
(-0.9)
P 		1544.4
(3)
P 		866
B 598.3
(-3)
P 		1095.4
(0.4)
P 		760
(-1.9)
P 		922.8
(-0.8)
P 		921.2
(-0.8)
P 		1470.2
(3)
P 		872
C 592.4
(-3)
P 		996
(-0.8)
P 		929.5
(-1.1)
P 		978.4
(-0.9)
P 		854.5
(-1.6)
P 		1682.1
(3)
P 		1090
avr 652.3
(-3) 		1051.3
(-0.4) 		789.3
(-2.1) 		896.7
(-1.4) 		919.6
(-1.2) 		1565.6
(3) 		913
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 220.6
(2.4)
P 		107.8
(-3)
P 		134.6
(-1.7)
P 		233.4
(3)
P 		126
B 241
(1.2)
P 		93.2
(-3)
P 		114.2
(-2.4)
P 		306.5
(3)
P 		213
C 221.9
(2.4)
P 		116.5
(-3)
P 		167.7
(-0.4)
P 		234.2
(3)
P 		118
avr 227.8
(1.8) 		105.8
(-3) 		138.8
(-1.7) 		258
(3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 422
1 2 3 4 5 6 range
A 141.3
(-3)
P 		377.8
(3)
P 		147.7
(-2.8)
P 		200.1
(-1.5)
P 		296.6
(0.9)
P 		376
(3)
P 		237
B 208.2
(-2.6)
P 		364.6
(-0)
P 		184.5
(-3)
P 		244.4
(-2)
P 		374.3
(0.1)
P 		548.2
(3)
P 		364
C 219.6
(-2.6)
P 		303.9
(-1.2)
P 		236.6
(-2.3)
P 		196.8
(-3)
P 		276.5
(-1.7)
P 		563.1
(3)
P 		366
avr 189.7
(-3) 		348.8
(0.1) 		189.6
(-3) 		213.8
(-2.5) 		315.8
(-0.5) 		495.8
(3) 		306
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192823_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4973
Sequence Type Exemplar sequence
Representative Public ID F41C3.2 NCBI
Target Description F41C3.2 /REP_DB=WormBase Gene ID /WP=CE02730 /TR=Q20265 /GB=AAC46809.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Sodium-phosphate transporter protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062448(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062448 NCBI Caenorhabditis elegans F41C3.2 (F41C3.2) mRNA, complete cds. 11/11 None
SNAP00000035623 ENSEMBL cdna:SNAP chromosome:CEL140:II:4749964:4752928:1 11/11 None
GENEFINDER00000035633 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4749964:4751573:1 11/11 None
F41C3.2.2 ENSEMBL cdna:known chromosome:CEL140:II:4749952:4751805:1 gene:F41C3.2 11/11 None
F41C3.2.1 ENSEMBL cdna:known chromosome:CEL140:II:4749954:4751805:1 gene:F41C3.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024223 1/11 Cross Hyb Matching Probes None
M01G12.8 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4750058-4751572(+) 100.0 100.0
Public Domain and Genome References
Gene Title Sodium/phosphate transporter protein
Ensembl F41C3.2
Entrez Gene 173821 Entrez gene
SwissProt Q20265 EMBL-EBI
WormBase CE02730 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46809 Hypothetical protein F41C3.2 [Caenorhabditis elegans] ref|NP_494849.1| F41C3.2 [Caenorhabditis elegans] 0.0
blast CAE73219 Hypothetical protein CBG20625 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009676 EMBL-EBI Protein of unknown function DUF1265 2.8E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494849.1 11 64-83,98-120,127-146,151-173,180-202,246-265,278-300,315-337,342-364,379-401,413-432
F41C3.2.2 11 64-83,98-120,127-146,151-173,180-202,246-265,278-300,315-337,342-364,379-401,413-432
F41C3.2.1 11 64-83,98-120,127-146,151-173,180-202,246-265,278-300,315-337,342-364,379-401,413-432
SNAP00000035623 11 35-57,96-115,124-146,156-178,212-234,278-297,310-332,347-369,374-396,411-433,445-464
GENEFINDER00000035633 12 35-57,96-115,124-146,156-178,183-205,215-234,278-300,315-334,347-369,374-396,416-435,445-464
Sequence
Target Sequence 
>C. ELEGANS:192823_AT
ttttcttgcaatacggcccaacttatctcaataaagttcttcattacaatctctcgacta
ctggatggactgcagcagttccttacatcttctcttgcattgcccgcattgttgctcaac
cattgtcagccaattgctcattcctcggagaacgtcttgctgcaattgtcaccactacaa
tttcccagggcacaatggccatctgcttccttgtcctcatgttcatcccacagacatggt
cctcagtcgggcaactctgctatagtttggtgatcgttgccaatggactgaatggagttg
gaattacaagaagtgctcagctggtttgcaagcagcatatgtcatttgtctacactgcta
gagcattttacaatggaagtgttggattgttcctgccattacttgttaactttgttgctc
caaatgatacacacaacgaatggacacgacttttcttaatcatcttctgcattgtcttcg
tctccaatctgatcttcattgccttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCTTGCAATACGGCCCAACTTA 637 673 800 Antisense
TCTCTCGACTACTGGATGGACTGCA 350 609 849 Antisense
TGGACTGCAGCAGTTCCTTACATCT 162 549 865 Antisense
ATTGTTGCTCAACCATTGTCAGCCA 226 5 907 Antisense
GCTCATTCCTCGGAGAACGTCTTGC 371 301 935 Antisense
TCTTGCTGCAATTGTCACCACTACA 289 619 954 Antisense
TTCCCAGGGCACAATGGCCATCTGC 629 695 981 Antisense
CTCAGTCGGGCAACTCTGCTATAGT 66 229 1041 Antisense
GTTGGATTGTTCCTGCCATTACTTG 617 435 1180 Antisense
GACACGACTTTTCTTAATCATCTTC 591 365 1242 Antisense
TCCAATCTGATCTTCATTGCCTTCT 507 587 1282 Antisense
Sequence Source Affymetrix Proprietary Database