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[192818_at]

Description K07A1.9 /REP_DB=WormBase Gene ID /WP=CE11856 /TR=P90914 /GB=CAB03170.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=arginyl-tRNA protein transferase like
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 55      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 76      6grp_total > 65      4grp_total > 39      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 574
1 2 3 4 range
A 1090.1
(3)
P 		564
(-3)
P 		573.7
(-2.9)
P 		624.9
(-2.3)
P 		526
B 1017.1
(3)
P 		597
(-2.3)
P 		543.1
(-3)
P 		641
(-1.8)
P 		474
C 1002.9
(3)
P 		516
(-3)
P 		558
(-2.5)
P 		678.4
(-1)
P 		487
avr 1036.7
(3) 		559
(-3) 		558.3
(-3) 		648.1
(-1.9) 		478

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 697
1 2 3 4 5 6 range
A 1275.1
(2.4)
P 		1031.3
(-3)
P 		1175.4
(0.2)
P 		1180.1
(0.3)
P 		1035.3
(-2.9)
P 		1301.8
(3)
P 		271
B 1109.8
(-0.9)
P 		1123
(-0.7)
P 		1057.7
(-1.9)
P 		1227.5
(1.1)
P 		992.3
(-3)
P 		1335
(3)
P 		343
C 864.2
(-2)
P 		1218.3
(1.1)
P 		1019.2
(-0.6)
P 		1440.5
(3)
P 		743.5
(-3)
P 		1195.5
(0.9)
P 		697
avr 1083
(-0.3) 		1124.2
(0.4) 		1084.1
(-0.3) 		1282.7
(3) 		923.7
(-3) 		1277.4
(2.9) 		359
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 305
1 2 3 4 range
A 396.9
(3)
P 		122.4
(-2.4)
P 		150
(-1.9)
P 		91.5
(-3)
P 		305
B 324.4
(3)
P 		147.4
(-2.3)
P 		125.8
(-3)
P 		136.6
(-2.7)
P 		199
C 332
(3)
P 		148.4
(-2.1)
P 		194.5
(-0.8)
P 		114.4
(-3)
P 		218
avr 351.1
(3) 		139.4
(-2.4) 		156.8
(-1.9) 		114.2
(-3) 		237

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 263
1 2 3 4 5 6 range
A 235.1
(-3)
P 		366.8
(3)
P 		256
(-2)
P 		299.3
(-0.1)
P 		312.4
(0.5)
P 		317
(0.7)
P 		132
B 386.2
(0.2)
P 		373.8
(-0.1)
P 		256.8
(-3)
P 		325.1
(-1.3)
P 		403.2
(0.6)
P 		497.8
(3)
P 		241
C 320.3
(-0)
P 		371.7
(1.9)
P 		259.4
(-2.3)
P 		289.7
(-1.2)
P 		240.6
(-3)
P 		400.2
(3)
P 		160
avr 313.9
(-0.7) 		370.8
(1.6) 		257.4
(-3) 		304.7
(-1.1) 		318.7
(-0.5) 		405
(3) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192818_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.722
Sequence Type Exemplar sequence
Representative Public ID K07A1.9 NCBI
Target Description K07A1.9 /REP_DB=WormBase Gene ID /WP=CE11856 /TR=P90914 /GB=CAB03170.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=arginyl-tRNA protein transferase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060148(11), NM_182030(11), NM_182029(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060148 NCBI Caenorhabditis elegans K07A1.9a (K07A1.9) mRNA, complete cds. 11/11 None
NM_182030 NCBI Caenorhabditis elegans K07A1.9c (K07A1.9) mRNA, complete cds. 11/11 None
NM_182029 NCBI Caenorhabditis elegans K07A1.9b (K07A1.9) mRNA, complete cds. 11/11 None
SNAP00000041855 ENSEMBL cdna:SNAP chromosome:CEL140:I:9620059:9623199:-1 10/11 None
GENEFINDER00000041864 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9620059:9623199:-1 11/11 None
K07A1.9a ENSEMBL cdna:known chromosome:CEL140:I:9619939:9623204:-1 gene:K07A1.9 11/11 None
K07A1.9b ENSEMBL cdna:known chromosome:CEL140:I:9620059:9623204:-1 gene:K07A1.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
K07A1.9c 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9619989-9622242(-) 100.0 100.0
Public Domain and Genome References
Ensembl K07A1.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03170 Hypothetical protein K07A1.9a [Caenorhabditis elegans] ref|NP_492549.2| K07A1.9a [Caenorhabditis elegans] 0.0
blast CAD56590 Hypothetical protein K07A1.9b [Caenorhabditis elegans] ref|NP_871829.1| K07A1.9b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007472 EMBL-EBI Arginine-tRNA-protein transferase, C-terminal 4.5E-93
Pfam IPR007471 EMBL-EBI Arginine-tRNA-protein transferase, N-terminal 2.7E-28
Pfam IPR007472 EMBL-EBI Arginine-tRNA-protein transferase, C-terminal 4.5E-93
Pfam IPR007471 EMBL-EBI Arginine-tRNA-protein transferase, N-terminal 2.7E-31
Pfam IPR007472 EMBL-EBI Arginine-tRNA-protein transferase, C-terminal 8.4E-16
Pfam IPR007472 EMBL-EBI Arginine-tRNA-protein transferase, C-terminal 4.4E-32
Sequence
Target Sequence 
>C. ELEGANS:192818_AT
tcgtagattcctctgtgattctccattgaaaaaagagcaaagaggaggaatagagctggg
ctcattccatctttggtttcttctagatgataaactgattgctgtttgtgtcgttgatat
tctaccaaaatgtttttcggccaaatacatgtattataatccggaatattcatttttgtc
cctgggaacatatacagctttgagagaaatcgagcaaactcaacgtcttcatgcaattta
ttcgaatctcaagtattactatatgggatactacattcactcgtgtccaaaaatgcgcta
caaggctaaatttcgcccaagtgatcttctttgtgaccaatcgtttcgatgggttgattt
taattcatgtcgtgatctccttgatggctcaacttgctcaaatggcttttctgagttctg
tccaggagctcctcgtccagcttctccagttgttgatactcttctcgtgttctctaacgg
atcaataacgactttgtcagatgcactcactgagattccagaagctgcagaaaacgagca
atttttagcaaatgttagggatttggcacatctcgtgggtcctgatttgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTAGATTCCTCTGTGATTCTCCA 691 603 636 Antisense
ATAGAGCTGGGCTCATTCCATCTTT 122 23 685 Antisense
AACTCAACGTCTTCATGCAATTTAT 662 139 852 Antisense
GGGATACTACATTCACTCGTGTCCA 533 495 900 Antisense
ATTTCGCCCAAGTGATCTTCTTTGT 668 15 945 Antisense
TCATGTCGTGATCTCCTTGATGGCT 555 621 1000 Antisense
GGCTTTTCTGAGTTCTGTCCAGGAG 12 539 1039 Antisense
CCAGCTTCTCCAGTTGTTGATACTC 480 273 1072 Antisense
ACTCTTCTCGTGTTCTCTAACGGAT 106 101 1093 Antisense
AACGACTTTGTCAGATGCACTCACT 108 145 1122 Antisense
ACATCTCGTGGGTCCTGATTTGAGC 44 107 1203 Antisense
Sequence Source Affymetrix Proprietary Database