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[192817_at]

Description R03A10.4 /REP_DB=WormBase Gene ID /WP=CE06210 /TR=Q21658 /GB=CAA93673.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=gluamine-phenylpyruvate transaminase
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_highest_8_8 > 12      4grp_high_8_8 > 31      6grp_highest_nonorm > 62      6grp_total > 32      4grp_total > 32      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 384
1 2 3 4 range
A 577.4
(-3)
P 		673.1
(-1.5)
P 		958.5
(3)
P 		855
(1.4)
P 		381
B 611.9
(-3)
P 		837.2
(2.6)
P 		843.6
(2.8)
P 		851.4
(3)
P 		240
C 574.6
(-3)
P 		672.9
(0.8)
P 		630
(-0.9)
P 		731.2
(3)
P 		157
avr 588
(-3) 		727.7
(0.7) 		810.7
(3) 		812.5
(3) 		225

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 410
1 2 3 4 5 6 range
A 479.9
(0.6)
P 		580.3
(2.7)
P 		545.9
(2)
P 		594.1
(3)
P 		359.6
(-1.9)
P 		308.5
(-3)
P 		286
B 590.5
(2)
P 		569.1
(1.5)
P 		639.1
(3)
P 		482.9
(-0.3)
P 		395.4
(-2.1)
P 		351.6
(-3)
P 		288
C 610.1
(1.3)
P 		520.7
(-0.1)
P 		718.2
(3)
P 		484.2
(-0.7)
P 		411.8
(-1.8)
P 		333.9
(-3)
P 		384
avr 560.2
(1.5) 		556.7
(1.5) 		634.4
(3) 		520.4
(0.7) 		388.9
(-1.9) 		331.3
(-3) 		303
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 210.2
(1.1)
P 		146.1
(-2)
P 		250.6
(3)
P 		125.2
(-3)
P 		125
B 195.1
(0.2)
P 		206.8
(3)
P 		195.5
(0.3)
P 		181.4
(-3)
P 		25
C 190.2
(1.2)
P 		193.5
(1.4)
P 		219.6
(3)
P 		123.3
(-3)
P 		96
avr 198.5
(1.2) 		182.1
(-0) 		221.9
(3) 		143.3
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 88.5
(-2.4)
P 		206.4
(3)
P 		118.9
(-1)
P 		150.7
(0.5)
P 		108.5
(-1.5)
P 		75.1
(-3)
P 		131
B 205.5
(3)
P 		189.4
(1.8)
P 		155.2
(-0.9)
P 		127.9
(-3)
P 		160.6
(-0.5)
P 		131.1
(-2.8)
P 		78
C 226.1
(3)
P 		158.9
(-0.1)
P 		182.8
(1)
P 		97.4
(-3)
P 		133.3
(-1.3)
P 		111.8
(-2.3)
P 		129
avr 173.4
(2.1) 		184.9
(3) 		152.3
(0.5) 		125.3
(-1.5) 		134.1
(-0.9) 		106
(-3) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192817_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17706
Sequence Type Exemplar sequence
Representative Public ID R03A10.4 NCBI
Target Description R03A10.4 /REP_DB=WormBase Gene ID /WP=CE06210 /TR=Q21658 /GB=CAA93673.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=gluamine-phenylpyruvate transaminase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029651(11), NM_001029652(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029651 NCBI Caenorhabditis elegans R03A10.4a (R03A10.4) mRNA, complete cds. 11/11 None
NM_001029652 NCBI Caenorhabditis elegans R03A10.4b (R03A10.4) mRNA, complete cds. 11/11 None
SNAP00000023411 ENSEMBL cdna:SNAP chromosome:CEL140:X:15441719:15443410:1 11/11 None
GENEFINDER00000023415 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15441719:15443410:1 11/11 None
R03A10.4a ENSEMBL cdna:known chromosome:CEL140:X:15441647:15443558:1 gene:R03A10.4 11/11 None
R03A10.4b ENSEMBL cdna:known chromosome:CEL140:X:15441718:15443410:1 gene:R03A10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15441667-15443410(+) 100.0 100.0
Public Domain and Genome References
Ensembl R03A10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93673 Hypothetical protein R03A10.4a [Caenorhabditis elegans] ref|NP_001024822.1| R03A10.4a [Caenorhabditis elegans] 0.0
blast CAI46593 Hypothetical protein R03A10.4b [Caenorhabditis elegans] ref|NP_001024823.1| R03A10.4b [Caenorhabditis elegans] 0.0
blast CAE63314 Hypothetical protein CBG07704 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec 1A11_CUCMA (P23599) 1-aminocyclopropane-1-carboxylate synthase CMW33 (EC 4.4.1.14) (ACC synthase) (S-adenosyl-L-methionine methylthioadenosine-lyase) 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR004839 EMBL-EBI Aminotransferase, class I and II 1.1E-22
Pfam IPR004839 EMBL-EBI Aminotransferase, class I and II 1.1E-22
Sequence
Target Sequence 
>C. ELEGANS:192817_AT
gaggtttatgagttccacgtgtgggacaagaatgatatggttcgctttgctagtcttccc
ggaatgtacgagcgcacaatatccattggaagtgctggcaaggcattctcagtcactggt
tggaagctgggatgggctgtcggtccaaagcagctcctcgagccgttgaaagccattcac
cagaactgcgtctttacctgctccacaccaactcaaatggctattgccgaagctttccgt
cttgactggccaaagttcttgagtgatccagaaaactcttacctggccactggactgtct
ggagagctccgcgcaaaacgtgacaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGTTTATGAGTTCCACGTGTGGG 277 401 706 Antisense
GATATGGTTCGCTTTGCTAGTCTTC 661 425 739 Antisense
CTTCCCGGAATGTACGAGCGCACAA 307 219 760 Antisense
GTGCTGGCAAGGCATTCTCAGTCAC 252 479 797 Antisense
TGGGCTGTCGGTCCAAAGCAGCTCC 597 553 838 Antisense
TCCTCGAGCCGTTGAAAGCCATTCA 201 593 860 Antisense
AAGCCATTCACCAGAACTGCGTCTT 428 149 875 Antisense
AATGGCTATTGCCGAAGCTTTCCGT 626 159 921 Antisense
CTTTCCGTCTTGACTGGCCAAAGTT 188 221 938 Antisense
CCTGGCCACTGGACTGTCTGGAGAG 26 267 987 Antisense
GAGCTCCGCGCAAAACGTGACAAGT 94 387 1009 Antisense
Sequence Source Affymetrix Proprietary Database