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[192816_at] serine/threonine protein phosphatase

Description F49E11.7 /REP_DB=WormBase Gene ID /WP=CE05903 /TR=Q27500 /GB=CAA94346.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster 6grp_total > 99      4grp_total > 25      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 7.1
(-3)
A 		81.1
(2.3)
A 		52.4
(0.2)
A 		91.4
(3)
A 		84
B 21.5
(-3)
A 		22.6
(-2.9)
A 		93.7
(3)
A 		37.7
(-1.7)
A 		72
C 46.9
(-0.5)
A 		52
(-0.2)
A 		3.8
(-3)
A 		107.3
(3)
A 		104
avr 25.2
(-3) 		51.9
(-0) 		50
(-0.2) 		78.8
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 39.4
(-1.2)
A 		27
(-3)
A 		30.1
(-2.5)
A 		33.3
(-2.1)
A 		53.8
(1)
A 		67.4
(3)
P 		40
B 24.9
(-2.1)
A 		50.2
(1.5)
A 		18.2
(-3)
A 		20.3
(-2.7)
A 		60.9
(3)
P 		48
(1.2)
M 		43
C 43.4
(0.9)
A 		22.8
(-3)
A 		51.9
(2.5)
A 		37.4
(-0.3)
A 		54.8
(3)
A 		48
(1.7)
P 		32
avr 35.9
(-1.7) 		33.3
(-2.3) 		33.4
(-2.3) 		30.3
(-3) 		56.5
(3) 		54.5
(2.5) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 2.6
(-3)
A 		17.6
(3)
A 		13.7
(1.4)
A 		13.4
(1.3)
A 		15
B 6.8
(-2.6)
A 		5.6
(-3)
A 		21.7
(3)
A 		8
(-2.1)
A 		16
C 15.5
(2.1)
A 		15
(1.9)
A 		1.3
(-3)
A 		18.1
(3)
A 		17
avr 8.3
(-3) 		12.7
(2.4) 		12.2
(1.8) 		13.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 7.3
(-2.6)
A 		9.6
(-1.2)
A 		6.6
(-3)
A 		8.5
(-1.8)
A 		16.2
(2.9)
A 		16.4
(3)
P 		10
B 8.7
(-1.7)
A 		16.7
(0.6)
A 		4.4
(-3)
A 		5.4
(-2.7)
A 		24.7
(3)
P 		17.9
(1)
M 		20
C 16.1
(2.1)
A 		7
(-3)
A 		13.2
(0.5)
A 		7.5
(-2.7)
A 		17.7
(3)
A 		16.1
(2.1)
P 		11
avr 10.7
(-1.3) 		11.1
(-1.1) 		8.1
(-2.5) 		7.1
(-3) 		19.5
(3) 		16.8
(1.7) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192816_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10081
Sequence Type Exemplar sequence
Representative Public ID F49E11.7 NCBI
Target Description F49E11.7 /REP_DB=WormBase Gene ID /WP=CE05903 /TR=Q27500 /GB=CAA94346.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070099(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070099 NCBI Caenorhabditis elegans F49E11.7 (F49E11.7) mRNA, complete cds. 11/11 None
SNAP00000011574 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13052937:13055124:1 11/11 None
GENEFINDER00000011583 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13053267:13055124:1 11/11 None
F49E11.7 ENSEMBL cdna:known chromosome:CEL140:IV:13053267:13055124:1 gene:F49E11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13053272-13055130(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine protein phosphatase
Ensembl F49E11.7
Entrez Gene 186051 Entrez gene
SwissProt Q27500 EMBL-EBI
WormBase CE05903 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94346 Hypothetical protein F49E11.7 [Caenorhabditis elegans] ref|NP_502500.1| F49E11.7 [Caenorhabditis elegans] 0.0
blast AAB92072 Hypothetical protein F42G8.8 [Caenorhabditis elegans] ref|NP_501356.1| F42G8.8 [Caenorhabditis elegans] 1.0E-148
blast NP_491821 F26B1.5a [Caenorhabditis elegans] gb|AAB37787.2| Hypothetical protein F26B1.5a [Caenorhabditis elegans] 1.0E-125
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 4.1E-36
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 4.1E-36
Sequence
Target Sequence 
>C. ELEGANS:192816_AT
gaaatcgatcgtccagttgcagaaattttgccagactctctggctcaagatttgctttgg
gctgacccagcagatggacaaggagcgatgactgttagatcaactccggagtacgttccc
aatggtgtccgtggactttcatttattttcaatgaggcagccgttcgtgatacttgtaaa
cgtctgaatatcaatctgatcgttcgagctcatcagatgattcctgaaggattcaagttc
tttgctgatcagaaacttctcacgatattctcggctccgcgttacatgaatgaaaccgat
aatcacggcgccacattgagagtcgagacagatggaaaactgaatattgggcgttttcgt
cataagaaacttcttcatgcaaattcagctgatgaaatcactcgtggagatgatattcct
aatttggaaagaaaaaagtcgggttcaatgccagtcaaacatttgaaaacatcgtcgtcg
tcgtcgccgtcgcactcgaacggcaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATCGATCGTCCAGTTGCAGAAA 3 361 622 Antisense
ATTTGCTTTGGGCTGACCCAGCAGA 537 11 671 Antisense
TACGTTCCCAATGGTGTCCGTGGAC 186 649 733 Antisense
GTCCGTGGACTTTCATTTATTTTCA 511 475 748 Antisense
ATCAATCTGATCGTTCGAGCTCATC 662 25 811 Antisense
GAAACTTCTCACGATATTCTCGGCT 526 355 873 Antisense
GAAACCGATAATCACGGCGCCACAT 88 359 913 Antisense
GGCGCCACATTGAGAGTCGAGACAG 364 541 928 Antisense
GAATATTGGGCGTTTTCGTCATAAG 390 325 963 Antisense
AGTCGGGTTCAATGCCAGTCAAACA 222 61 1058 Antisense
TCGCCGTCGCACTCGAACGGCAAAA 501 599 1105 Antisense
Sequence Source Affymetrix Proprietary Database