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[192814_at] BTB (also known as BR-C/Ttk) domain.

Description W02A11.8 /REP_DB=WormBase Gene ID /WP=CE18993 /TR=Q9XUM9 /GB=CAB04888.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=BTB (also known as BR-C-Ttk) domain.
Cluster 6grp_total > 85      4grp_total > 01      6grp_cgc > 67      6grp_cgc_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 11.5
(-2.8)
A 		9.9
(-3)
A 		37.3
(1.1)
A 		49.9
(3)
A 		40
B 14.4
(-2.7)
A 		23.6
(-1.6)
A 		11.8
(-3)
A 		64.1
(3)
A 		52
C 12.3
(-2.7)
A 		8.7
(-3)
A 		16.4
(-2.3)
A 		78.6
(3)
A 		70
avr 12.7
(-3) 		14.1
(-2.8) 		21.8
(-1.9) 		64.2
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 11.6
(-1.9)
A 		3.9
(-3)
A 		47.5
(3)
A 		44.9
(2.6)
A 		9.3
(-2.3)
A 		24.8
(-0.1)
A 		44
B 26.6
(-1.4)
A 		10.4
(-3)
A 		34.3
(-0.6)
A 		71.1
(3)
A 		61
(2)
A 		65.6
(2.5)
A 		61
C 10.3
(-3)
A 		27.5
(-1.7)
A 		31.7
(-1.4)
A 		61.6
(0.9)
A 		54.7
(0.4)
A 		89.5
(3)
A 		79
avr 16.2
(-2.7) 		13.9
(-3) 		37.8
(0.1) 		59.2
(2.9) 		41.7
(0.6) 		60
(3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4.2
(-1.4)
A 		2.1
(-3)
A 		9.8
(3)
A 		7.3
(1.1)
A 		8
B 4.6
(-2)
A 		5.8
(-1.3)
A 		2.7
(-3)
A 		13.6
(3)
A 		11
C 4.1
(-2.1)
A 		2.5
(-3)
A 		5.7
(-1.2)
A 		13.3
(3)
A 		11
avr 4.3
(-2.4) 		3.5
(-3) 		6.1
(-1) 		11.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 2.1
(-2.6)
A 		1.4
(-3)
A 		10.3
(2.3)
A 		11.4
(3)
A 		2.8
(-2.2)
A 		6
(-0.2)
A 		10
B 9.2
(-1.4)
A 		3.5
(-3)
A 		8.3
(-1.6)
A 		18.8
(1.3)
A 		24.8
(3)
A 		24.4
(2.9)
A 		21
C 3.8
(-3)
A 		8.4
(-1.9)
A 		8.1
(-2)
A 		12.4
(-1)
A 		17.7
(0.2)
A 		29.9
(3)
A 		26
avr 5
(-2.8) 		4.4
(-3) 		8.9
(-1.3) 		14.2
(0.7) 		15.1
(1.1) 		20.1
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192814_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1152
Sequence Type Exemplar sequence
Representative Public ID W02A11.8 NCBI
Target Description W02A11.8 /REP_DB=WormBase Gene ID /WP=CE18993 /TR=Q9XUM9 /GB=CAB04888.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=BTB (also known as BR-C-Ttk) domain.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060834(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060834 NCBI Caenorhabditis elegans W02A11.8 (W02A11.8) mRNA, complete cds. 11/11 None
SNAP00000019303 ENSEMBL cdna:SNAP chromosome:CEL140:I:12766645:12771909:1 11/11 None
GENEFINDER00000019309 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12766645:12767590:1 11/11 None
W02A11.8 ENSEMBL cdna:known chromosome:CEL140:I:12766645:12767590:1 gene:W02A11.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12766575-12767521(+) 100.0 100.0
Public Domain and Genome References
Gene Title BTB (also known as BR-C/Ttk) domain.
Gene Symbol bath-35
Ensembl W02A11.8
Entrez Gene 189101 Entrez gene
SwissProt Q9XUM9 EMBL-EBI
WormBase CE18993 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04888 Hypothetical protein W02A11.8 [Caenorhabditis elegans] ref|NP_493235.1| W02A11.8 [Caenorhabditis elegans] 1.0E-147
blast CAB04888 Hypothetical protein W02A11.8 [Caenorhabditis elegans] ref|NP_493235.1| W02A11.8 [Caenorhabditis elegans] 1.0E-144
blast CAE72466 Hypothetical protein CBG19640 [Caenorhabditis briggsae] 7.0E-46
blast CAE74563 Hypothetical protein CBG22325 [Caenorhabditis briggsae] 4.0E-45
blast CAE72466 Hypothetical protein CBG19640 [Caenorhabditis briggsae] 4.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.6E-22
Sequence
Target Sequence 
>C. ELEGANS:192814_AT
gaatgagaagttccatgtttccaaaatgtttctggccgctcaatcatctcacttcaagct
tctcttcaaaaattccaacgattctgaaattgctttggatggaatcattccagaagattt
tcaaaatttcctggaacttctctacggtgaaccagcgctgactgaggacagtgtcgaggg
aatcctacaaattgctgccagatttgatgtttccacggttattcgtaaaggtgaagactt
tctgctccaaaaatcggaattttcacctgagaagaagctgcaaatgtctttgaagtataa
tttggagaatctcaagagtaaatgcctttccgaggtcaaatcagttgctgatattcgttc
cgttttgccaaaggacataaaagaaatggatcattctgtaatggcggagctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGAGAAGTTCCATGTTTCCAAA 332 331 369 Antisense
TTCCAAAATGTTTCTGGCCGCTCAA 699 699 387 Antisense
ACCAGCGCTGACTGAGGACAGTGTC 368 85 519 Antisense
GGGAATCCTACAAATTGCTGCCAGA 668 493 546 Antisense
GCTGCCAGATTTGATGTTTCCACGG 409 297 562 Antisense
GATGTTTCCACGGTTATTCGTAAAG 622 409 574 Antisense
GAAGACTTTCTGCTCCAAAAATCGG 187 339 601 Antisense
AATGCCTTTCCGAGGTCAAATCAGT 556 163 689 Antisense
CAGTTGCTGATATTCGTTCCGTTTT 48 207 710 Antisense
TTCGTTCCGTTTTGCCAAAGGACAT 365 685 722 Antisense
GGATCATTCTGTAATGGCGGAGCTC 638 511 756 Antisense
Sequence Source Affymetrix Proprietary Database