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[192812_at] BTB (also known as BR-C/Ttk) domain.

Description W02A11.5 /REP_DB=WormBase Gene ID /WP=CE18992 /TR=Q9XUM6 /GB=CAB04892.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=BTB (also known as BR-C-Ttk) domain.
Cluster 6grp_total > 95      4grp_total > 21      6grp_cgc > 77      6grp_cgc_sub > 04_05_06      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 1.4
(-3)
A 		15.9
(3)
A 		3.3
(-2.2)
A 		3.8
(-2)
A 		15
B 20.6
(1.5)
A 		2.3
(-3)
A 		2.8
(-2.9)
A 		26.9
(3)
A 		25
C 9.2
(3)
A 		1.3
(-2.8)
A 		1
(-3)
A 		3.2
(-1.4)
A 		8
avr 10.4
(2.4) 		6.5
(-0.2) 		2.4
(-3) 		11.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 13.3
(1.2)
A 		1.2
(-3)
A 		11.5
(0.6)
A 		18.4
(3)
A 		14.2
(1.5)
A 		12.5
(0.9)
A 		17
B 15.1
(1.7)
A 		2.3
(-2.8)
A 		1.6
(-3)
A 		18.8
(3)
A 		6.9
(-1.2)
A 		17.8
(2.7)
A 		17
C 1
(-3)
A 		2.1
(-2.6)
A 		1.7
(-2.8)
A 		2.1
(-2.6)
A 		19.6
(3)
A 		8
(-0.7)
A 		19
avr 9.8
(1.1) 		1.9
(-3) 		4.9
(-1.5) 		13.1
(2.7) 		13.6
(3) 		12.8
(2.6) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.5
(-3)
A 		3.4
(3)
A 		0.9
(-2.2)
A 		0.6
(-2.8)
A 		3
B 6.6
(3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		5.7
(2.1)
A 		6
C 3.1
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.5
(-2.8)
A 		3
avr 3.4
(3) 		1.5
(-1.1) 		0.6
(-3) 		2.3
(0.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 2.4
(-0.2)
A 		0.4
(-3)
A 		2.5
(-0.1)
A 		4.7
(3)
A 		4.3
(2.4)
A 		3
(0.6)
A 		4
B 5.2
(1.6)
A 		0.8
(-2.6)
A 		0.4
(-3)
A 		5
(1.5)
A 		2.8
(-0.7)
A 		6.6
(3)
A 		6
C 0.4
(-3)
A 		0.7
(-2.7)
A 		0.4
(-3)
A 		0.4
(-3)
A 		6.3
(3)
A 		2.7
(-0.7)
A 		6
avr 2.7
(0.2) 		0.6
(-3) 		1.1
(-2.2) 		3.4
(1.3) 		4.5
(3) 		4.1
(2.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192812_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1049
Sequence Type Exemplar sequence
Representative Public ID W02A11.5 NCBI
Target Description W02A11.5 /REP_DB=WormBase Gene ID /WP=CE18992 /TR=Q9XUM6 /GB=CAB04892.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=BTB (also known as BR-C-Ttk) domain.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060833(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060833 NCBI Caenorhabditis elegans W02A11.5 (W02A11.5) mRNA, complete cds. 11/11 None
GENEFINDER00000019308 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12758157:12763091:1 11/11 None
SNAP00000019300 ENSEMBL cdna:SNAP chromosome:CEL140:I:12759583:12760188:1 11/11 None
W02A11.5 ENSEMBL cdna:known chromosome:CEL140:I:12758157:12760188:1 gene:W02A11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12758087-12760119(+) 99.48 100.0
Public Domain and Genome References
Gene Title BTB (also known as BR-C/Ttk) domain.
Gene Symbol bath-34
Ensembl W02A11.5
Entrez Gene 189100 Entrez gene
SwissProt Q9XUM6 EMBL-EBI
WormBase CE18992 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04892 Hypothetical protein W02A11.5 [Caenorhabditis elegans] ref|NP_493234.1| W02A11.5 [Caenorhabditis elegans] 0.0
blast CAB04892 Hypothetical protein W02A11.5 [Caenorhabditis elegans] ref|NP_493234.1| W02A11.5 [Caenorhabditis elegans] 1.0E-105
blast CAB04888 Hypothetical protein W02A11.8 [Caenorhabditis elegans] ref|NP_493235.1| W02A11.8 [Caenorhabditis elegans] 4.0E-30
blast CAB04888 Hypothetical protein W02A11.8 [Caenorhabditis elegans] ref|NP_493235.1| W02A11.8 [Caenorhabditis elegans] 2.0E-29
blast CAE73422 Hypothetical protein CBG20865 [Caenorhabditis briggsae] 4.0E-26
blast CAE73422 Hypothetical protein CBG20865 [Caenorhabditis briggsae] 5.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.3E-10
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.3E-10
Sequence
Target Sequence 
>C. ELEGANS:192812_AT
gagcatcaagcgagaacgtcctagcagaaagttactcgtgtacctaaaccttgactgtga
gaagctgccaacaaataattggattattgaagctgatatccaatgtacactaaatcagta
ttatttcaatgaatgggttagaaaattcgaaagaaaagaagatgcaattttcaaatgcga
gaatggcgagtacacggacaaattggtatttaattttggtgaatacgaagaaatattgag
aacatttactaaaaatggcgtttggaatattgagtttgatgtggatatcatcaaaactgt
cggtctcagcaagaagaaactgagatgtttcgatgagtccgcagcagaagtgtccgatgc
agtgatgattgttaaggatgagaagtttcatgtttccaagatgtttctcgccgctcagtc
atcaaacttcaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCATCAAGCGAGAACGTCCTAGC 213 389 609 Antisense
CGTCCTAGCAGAAAGTTACTCGTGT 301 245 625 Antisense
TACTCGTGTACCTAAACCTTGACTG 527 639 641 Antisense
ACCTTGACTGTGAGAAGCTGCCAAC 622 85 656 Antisense
GAAGCTGATATCCAATGTACACTAA 156 343 697 Antisense
GCGAGAATGGCGAGTACACGGACAA 205 289 785 Antisense
GATATCATCAAAACTGTCGGTCTCA 107 427 892 Antisense
GAGATGTTTCGATGAGTCCGCAGCA 12 397 930 Antisense
GTCCGCAGCAGAAGTGTCCGATGCA 678 475 945 Antisense
CATGTTTCCAAGATGTTTCTCGCCG 168 211 997 Antisense
GCCGCTCAGTCATCAAACTTCAAGC 667 285 1018 Antisense
Sequence Source Affymetrix Proprietary Database