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[192810_s_at] Zinc finger, C3HC4 type (RING finger)

Description F43G6.8 /REP_DB=WormBase Gene ID /WP=CE20789 /TR=Q20369 /GB=CAA90397.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 60      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 52      6grp_total > 61      4grp_total > 12      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1715
1 2 3 4 range
A 856.9
(-1.5)
P 		677.7
(-2.1)
P 		433.2
(-3)
P 		2141.7
(3)
P 		1709
B 959
(-0.9)
P 		679.8
(-2.1)
P 		476.2
(-3)
P 		1872.6
(3)
P 		1396
C 926.6
(-0.9)
P 		533.2
(-2.6)
P 		426.6
(-3)
P 		1860.6
(3)
P 		1434
avr 914.2
(-1.1) 		630.2
(-2.3) 		445.3
(-3) 		1958.3
(3) 		1513

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 499
1 2 3 4 5 6 range
A 786.8
(1.7)
P 		499.1
(-1.8)
P 		677.1
(0.4)
P 		897.2
(3)
P 		635.6
(-0.1)
P 		397.8
(-3)
P 		499
B 675.6
(1)
P 		550.2
(-0.9)
P 		776.2
(2.6)
P 		669.9
(0.9)
P 		804.5
(3)
P 		410.9
(-3)
P 		394
C 664.1
(2.4)
P 		538.3
(-1.4)
P 		667.7
(2.5)
P 		675.3
(2.7)
P 		683.6
(3)
P 		487.6
(-3)
P 		196
avr 708.8
(2.3) 		529.2
(-1.2) 		707
(2.2) 		747.5
(3) 		707.9
(2.2) 		432.1
(-3) 		315
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 289
1 2 3 4 range
A 312
(3)
P 		147.1
(-2)
P 		113.3
(-3)
P 		313.5
(3)
P 		200
B 305.8
(1.1)
P 		167.9
(-1.8)
P 		110.3
(-3)
P 		399.1
(3)
P 		289
C 306.7
(2.7)
P 		153.3
(-2.8)
P 		148.7
(-3)
P 		313.7
(3)
P 		165
avr 308.2
(2.1) 		156.1
(-2.1) 		124.1
(-3) 		342.1
(3) 		218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 230
1 2 3 4 5 6 range
A 145
(-0.8)
P 		177.5
(0.7)
P 		147.5
(-0.7)
P 		227.6
(3)
P 		191.8
(1.4)
P 		96.9
(-3)
P 		131
B 235.1
(-0.2)
P 		183.1
(-2)
P 		188.5
(-1.8)
P 		177.4
(-2.2)
P 		326.8
(3)
P 		153.2
(-3)
P 		174
C 246.2
(3)
P 		164.2
(-1.5)
P 		169.9
(-1.1)
P 		135.8
(-3)
P 		221.2
(1.6)
P 		163.2
(-1.5)
P 		110
avr 208.8
(0.9) 		174.9
(-1) 		168.6
(-1.3) 		180.3
(-0.7) 		246.6
(3) 		137.8
(-3) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192810_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2791
Sequence Type Exemplar sequence
Representative Public ID F43G6.8 NCBI
Target Description F43G6.8 /REP_DB=WormBase Gene ID /WP=CE20789 /TR=Q20369 /GB=CAA90397.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064122(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064122 NCBI Caenorhabditis elegans F43G6.8 (F43G6.8) mRNA, complete cds. 11/11 None
SNAP00000023959 ENSEMBL cdna:SNAP chromosome:CEL140:II:11812279:11813138:-1 10/11 None
GENEFINDER00000023966 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11811509:11813933:-1 11/11 None
F43G6.8 ENSEMBL cdna:known chromosome:CEL140:II:11812259:11813983:-1 gene:F43G6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11812275-11813930(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Ensembl F43G6.8
Entrez Gene 174815 Entrez gene
SwissProt Q20369 EMBL-EBI
WormBase CE20789 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90397 Hypothetical protein F43G6.8 [Caenorhabditis elegans] ref|NP_496523.1| F43G6.8 [Caenorhabditis elegans] 1.0E-144
blast CAA90397 Hypothetical protein F43G6.8 [Caenorhabditis elegans] ref|NP_496523.1| F43G6.8 [Caenorhabditis elegans] 1.0E-140
blast CAA90397 Hypothetical protein F43G6.8 [Caenorhabditis elegans] ref|NP_496523.1| F43G6.8 [Caenorhabditis elegans] 6.0E-95
blast CAE73383 Hypothetical protein CBG20823 [Caenorhabditis briggsae] 1.0E-18
blast CAE73382 Hypothetical protein CBG20822 [Caenorhabditis briggsae] 2.0E-18
blast CAE73382 Hypothetical protein CBG20822 [Caenorhabditis briggsae] 5.0E-18
blast CAE73382 Hypothetical protein CBG20822 [Caenorhabditis briggsae] 1.0E-17
Sequence
Target Sequence 
>C. ELEGANS:192810_S_AT
aaaaatgtacgccacacaatgccgcctgaatgacatggagaatatctatgatgatttgga
aatggagagcaagattatggcagactttatagatcactactatgattctcggaatattac
tgaagaggatcgagatgaattgcaggacaagctggacgaagaagctgcaaattacaggga
tctcgaagaccgaatcaaggaagttaggcaccgagatcgttatatgaaaactgtggagac
tgagagaaaacgaacaacgttctatcggaagaagatgctcgagttggccgagcagctgca
gtttgagcagcaggaggtgactggagagactcctctgtggaaactttgcgagatatgcgc
gcatcagttttcccacagtgatgagtatgtaccacgtgtgttggtatgtggtcacacact
ttgcacgtcttgcatcgaaaaactggacgttggagacggaattcgctgcccattctgcag
aactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAATGTACGCCACACAATGCCGC 334 129 261 Antisense
CACAATGCCGCCTGAATGACATGGA 84 195 275 Antisense
GGAAGTTAGGCACCGAGATCGTTAT 405 529 459 Antisense
TTGGCCGAGCAGCTGCAGTTTGAGC 369 709 544 Antisense
GGAGGTGACTGGAGAGACTCCTCTG 82 515 573 Antisense
GACTCCTCTGTGGAAACTTTGCGAG 492 373 588 Antisense
AGATATGCGCGCATCAGTTTTCCCA 625 65 611 Antisense
TATGTGGTCACACACTTTGCACGTC 640 655 665 Antisense
GCACGTCTTGCATCGAAAAACTGGA 251 313 683 Antisense
ACGTTGGAGACGGAATTCGCTGCCC 16 95 707 Antisense
ATTCGCTGCCCATTCTGCAGAACTT 439 9 721 Antisense
Sequence Source Affymetrix Proprietary Database