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[192807_s_at] protein tyrosine-phosphatase family

Description F13D11.3 /REP_DB=WormBase Gene ID /WP=CE04389 /TR=Q19388 /GB=AAA81700.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=protein tyrosine-phosphatase family
Cluster 6grp_highest_10_10 > 74      6grp_high1_10_10 > 47      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 84      6grp_total > 58      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 884
1 2 3 4 range
A 830.9
(0.2)
P 		538.1
(-2)
P 		395.5
(-3)
P 		1210.6
(3)
P 		815
B 743.1
(-1.1)
P 		631.2
(-1.9)
P 		492.4
(-3)
P 		1279.5
(3)
P 		787
C 876
(0.1)
P 		639.4
(-1.7)
P 		468.5
(-3)
P 		1250.3
(3)
P 		782
avr 816.7
(-0.2) 		602.9
(-1.9) 		452.1
(-3) 		1246.8
(3) 		795

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 375
1 2 3 4 5 6 range
A 577.7
(0.1)
P 		530.9
(-0.7)
P 		675.4
(1.7)
P 		514.4
(-1)
P 		392.2
(-3)
P 		751
(3)
P 		359
B 749
(3)
P 		453.6
(-2.5)
P 		511.8
(-1.4)
P 		424.4
(-3)
P 		462.5
(-2.3)
P 		747.2
(3)
P 		325
C 767.3
(3)
P 		472.8
(-3)
P 		488.6
(-2.7)
P 		541.7
(-1.6)
P 		489.5
(-2.7)
P 		741.1
(2.5)
P 		295
avr 698
(2) 		485.8
(-2.2) 		558.6
(-0.8) 		493.5
(-2.1) 		448.1
(-3) 		746.4
(3) 		298
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 302.5
(3)
P 		116.8
(-2.6)
P 		103.4
(-3)
P 		177.2
(-0.8)
P 		199
B 237
(1.6)
P 		155.9
(-1.4)
P 		114.1
(-3)
P 		272.7
(3)
P 		159
C 290
(3)
P 		183.8
(-2)
P 		163.3
(-3)
P 		210.8
(-0.8)
P 		127
avr 276.5
(3) 		152.2
(-2) 		126.9
(-3) 		220.2
(0.7) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 106.5
(-3)
P 		188.8
(3)
P 		147.1
(-0)
P 		130.5
(-1.3)
P 		118.4
(-2.1)
P 		182.8
(2.6)
P 		82
B 260.6
(2.4)
P 		151
(-1.6)
P 		124.3
(-2.6)
P 		112.4
(-3)
P 		187.9
(-0.3)
P 		278.6
(3)
P 		166
C 284.4
(3)
P 		144.3
(-1.8)
P 		124.4
(-2.5)
P 		108.9
(-3)
P 		158.4
(-1.3)
P 		248.1
(1.8)
P 		176
avr 217.2
(2) 		161.4
(-0.8) 		131.9
(-2.3) 		117.3
(-3) 		154.9
(-1.1) 		236.5
(3) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192807_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15981
Sequence Type Exemplar sequence
Representative Public ID F13D11.3 NCBI
Target Description F13D11.3 /REP_DB=WormBase Gene ID /WP=CE04389 /TR=Q19388 /GB=AAA81700.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=protein tyrosine-phosphatase family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076574(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076574 NCBI Caenorhabditis elegans F13D11.3 (F13D11.3) mRNA, complete cds. 11/11 A 
SNAP00000005816 ENSEMBL cdna:SNAP chromosome:CEL140:X:5804438:5805866:-1 11/11 None
GENEFINDER00000005824 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5804438:5805866:-1 11/11 None
F13D11.3 ENSEMBL cdna:known chromosome:CEL140:X:5804348:5805882:-1 gene:F13D11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5804347-5805866(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein tyrosine-phosphatase family
Ensembl F13D11.3
Entrez Gene 180847 Entrez gene
SwissProt Q19388 EMBL-EBI
WormBase CE04389 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8138 protein tyrosine/serine/threonine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81700 Hypothetical protein F13D11.3 [Caenorhabditis elegans] ref|NP_508975.1| F13D11.3 [Caenorhabditis elegans] 1.0E-102
blast AAA81700 Hypothetical protein F13D11.3 [Caenorhabditis elegans] ref|NP_508975.1| F13D11.3 [Caenorhabditis elegans] 3.0E-94
blast AAA81700 Hypothetical protein F13D11.3 [Caenorhabditis elegans] ref|NP_508975.1| F13D11.3 [Caenorhabditis elegans] 3.0E-92
blast CAE68803 Hypothetical protein CBG14753 [Caenorhabditis briggsae] 4.0E-85
blast CAE68803 Hypothetical protein CBG14753 [Caenorhabditis briggsae] 1.0E-83
blast CAE68803 Hypothetical protein CBG14753 [Caenorhabditis briggsae] 4.0E-83
blast CAE60209 Hypothetical protein CBG03773 [Caenorhabditis briggsae] 6.0E-30
blast CAE60209 Hypothetical protein CBG03773 [Caenorhabditis briggsae] 7.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR000340 EMBL-EBI Dual specificity protein phosphatase 8.9E-60
Pfam IPR000340 EMBL-EBI Dual specificity protein phosphatase 1.1E-56
Sequence
Target Sequence 
>C. ELEGANS:192807_S_AT
tatctactgtgcggcgggagtcagtagaagtgcaacattgacaattgtctatttgatggt
caccgagaatctgtccttggaagaggcatacctgcaagtgaaccaggttcgtccgatcat
ctcgccaaatattggattttggcgacaaatgattgattttgaaaaacagagaaatggaaa
tgcaagcgtggagctgatcagtggcagaatggcaagacctgtaccgagtgtttatttacg
cagagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCTACTGTGCGGCGGGAGTCAGT 391 659 282 Antisense
GGCGGGAGTCAGTAGAAGTGCAACA 529 539 294 Antisense
GACAATTGTCTATTTGATGGTCACC 663 363 321 Antisense
TGATGGTCACCGAGAATCTGTCCTT 539 567 335 Antisense
ATCTGTCCTTGGAAGAGGCATACCT 430 31 350 Antisense
AGAGGCATACCTGCAAGTGAACCAG 677 65 363 Antisense
AAGTGAACCAGGTTCGTCCGATCAT 262 159 377 Antisense
GTCCGATCATCTCGCCAAATATTGG 198 477 392 Antisense
GCAAGCGTGGAGCTGATCAGTGGCA 674 319 463 Antisense
GAATGGCAAGACCTGTACCGAGTGT 328 333 488 Antisense
TACCGAGTGTTTATTTACGCAGAGT 289 649 503 Antisense
Sequence Source Affymetrix Proprietary Database