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[192806_at] protein tyrosine-phosphatase family

Description F13D11.3 /REP_DB=WormBase Gene ID /WP=CE04389 /TR=Q19388 /GB=AAA81700.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=protein tyrosine-phosphatase family
Cluster 6grp_highest_10_10 > 74      6grp_high1_10_10 > 57      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 85      6grp_total > 47      4grp_total > 12      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1216
1 2 3 4 range
A 836.2
(-0.9)
P 		802.5
(-1.1)
P 		437.7
(-3)
P 		1573.5
(3)
P 		1136
B 992.5
(-0.8)
P 		905.7
(-1.2)
P 		596.5
(-3)
P 		1653.8
(3)
P 		1057
C 1147.3
(0.2)
P 		740.8
(-3)
P 		738.2
(-3)
P 		1508.4
(3)
P 		770
avr 992
(-0.6) 		816.3
(-1.6) 		590.8
(-3) 		1578.6
(3) 		988

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 593
1 2 3 4 5 6 range
A 808.2
(1.5)
P 		726.6
(0.1)
P 		689.7
(-0.6)
P 		696.6
(-0.4)
P 		551.2
(-3)
P 		892.8
(3)
P 		342
B 841.8
(1.3)
P 		806.1
(0.7)
P 		793.4
(0.5)
P 		565.3
(-3)
P 		700
(-0.9)
P 		951.6
(3)
P 		386
C 918
(0.9)
P 		775.8
(-0.6)
P 		589.6
(-2.4)
P 		629.1
(-2)
P 		533.8
(-3)
P 		1127
(3)
P 		593
avr 856
(1) 		769.5
(-0.4) 		690.9
(-1.5) 		630.3
(-2.5) 		595
(-3) 		990.5
(3) 		396
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 304.5
(3)
P 		174.2
(-1.1)
P 		114.4
(-3)
P 		230.3
(0.7)
P 		190
B 316.5
(2)
P 		223.7
(-0.6)
P 		138.2
(-3)
P 		352.4
(3)
P 		214
C 379.8
(3)
P 		213
(-3)
P 		257.3
(-1.4)
P 		254.3
(-1.5)
P 		167
avr 333.6
(3) 		203.6
(-1.8) 		170
(-3) 		279
(1) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 251
1 2 3 4 5 6 range
A 149
(-3)
P 		258.4
(3)
P 		150.2
(-2.9)
P 		176.7
(-1.5)
P 		166.3
(-2.1)
P 		217.4
(0.8)
P 		109
B 292.9
(1.2)
P 		268.3
(0.5)
P 		192.7
(-1.7)
P 		149.7
(-3)
P 		284.4
(0.9)
P 		354.8
(3)
P 		205
C 340.2
(2.1)
P 		236.7
(-0.4)
P 		150.1
(-2.4)
P 		126.5
(-3)
P 		172.7
(-1.9)
P 		377.3
(3)
P 		251
avr 260.7
(1) 		254.5
(0.8) 		164.3
(-2.5) 		151
(-3) 		207.8
(-0.9) 		316.5
(3) 		166
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192806_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15981
Sequence Type Exemplar sequence
Representative Public ID F13D11.3 NCBI
Target Description F13D11.3 /REP_DB=WormBase Gene ID /WP=CE04389 /TR=Q19388 /GB=AAA81700.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=protein tyrosine-phosphatase family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076574(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076574 NCBI Caenorhabditis elegans F13D11.3 (F13D11.3) mRNA, complete cds. 11/11 A 
SNAP00000005816 ENSEMBL cdna:SNAP chromosome:CEL140:X:5804438:5805866:-1 11/11 None
GENEFINDER00000005824 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5804438:5805866:-1 11/11 None
F13D11.3 ENSEMBL cdna:known chromosome:CEL140:X:5804348:5805882:-1 gene:F13D11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5804347-5805866(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein tyrosine-phosphatase family
Ensembl F13D11.3
Entrez Gene 180847 Entrez gene
SwissProt Q19388 EMBL-EBI
WormBase CE04389 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8138 protein tyrosine/serine/threonine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81700 Hypothetical protein F13D11.3 [Caenorhabditis elegans] ref|NP_508975.1| F13D11.3 [Caenorhabditis elegans] 1.0E-102
blast AAA81700 Hypothetical protein F13D11.3 [Caenorhabditis elegans] ref|NP_508975.1| F13D11.3 [Caenorhabditis elegans] 3.0E-94
blast AAA81700 Hypothetical protein F13D11.3 [Caenorhabditis elegans] ref|NP_508975.1| F13D11.3 [Caenorhabditis elegans] 3.0E-92
blast CAE68803 Hypothetical protein CBG14753 [Caenorhabditis briggsae] 4.0E-85
blast CAE68803 Hypothetical protein CBG14753 [Caenorhabditis briggsae] 1.0E-83
blast CAE68803 Hypothetical protein CBG14753 [Caenorhabditis briggsae] 4.0E-83
blast CAE60209 Hypothetical protein CBG03773 [Caenorhabditis briggsae] 6.0E-30
blast CAE60209 Hypothetical protein CBG03773 [Caenorhabditis briggsae] 7.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR000340 EMBL-EBI Dual specificity protein phosphatase 8.9E-60
Pfam IPR000340 EMBL-EBI Dual specificity protein phosphatase 1.1E-56
Sequence
Target Sequence 
>C. ELEGANS:192806_AT
caaaacaaggctcttctctctatcacacaagtgcgaccacatttgttcctcgctggatac
ggctgtatcaccccttcactgttaaaacaatataacataactcatggtgttgattgcaca
aacctgaaaacaaagcctatcaaaggactggatagaattgaggtcccagtcgatgacaat
acacttgcaaaaattactcagtactttgagccagtggtcaagtatatcgaggatgcaaag
caacaaggacacaacacggttatctactgtgcggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAACAAGGCTCTTCTCTCTATCA 397 191 22 Antisense
CTCTCTATCACACAAGTGCGACCAC 342 231 37 Antisense
CACATTTGTTCCTCGCTGGATACGG 379 195 59 Antisense
TCGCTGGATACGGCTGTATCACCCC 108 601 71 Antisense
TATCACCCCTTCACTGTTAAAACAA 653 655 87 Antisense
CATGGTGTTGATTGCACAAACCTGA 33 211 124 Antisense
GAGGTCCCAGTCGATGACAATACAC 705 401 181 Antisense
TACTCAGTACTTTGAGCCAGTGGTC 587 641 216 Antisense
GAGCCAGTGGTCAAGTATATCGAGG 489 385 229 Antisense
GCAAAGCAACAAGGACACAACACGG 124 319 256 Antisense
ACAACACGGTTATCTACTGTGCGGC 354 111 272 Antisense
Sequence Source Affymetrix Proprietary Database