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[192804_at] Zinc finger, C3HC4 type (RING finger)

Description F46F2.1 /REP_DB=WormBase Gene ID /WP=CE05878 /TR=Q20469 /GB=CAA93773.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_total > 33      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 20.6
(-1.8)
A 		8
(-3)
A 		39.5
(0.1)
A 		68.7
(3)
A 		61
B 5
(0.7)
A 		2.2
(-2.9)
A 		2.1
(-3)
A 		6.8
(3)
A 		5
C 4.1
(-2.9)
A 		6.3
(-2.7)
A 		3.3
(-3)
A 		66.7
(3)
A 		63
avr 9.9
(-2.4) 		5.5
(-3) 		15
(-1.6) 		47.4
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 41.8
(3)
A 		6.2
(-2.5)
A 		14.2
(-1.3)
A 		6.2
(-2.5)
A 		10.3
(-1.9)
A 		3.1
(-3)
A 		39
B 25.3
(3)
A 		5
(-2.3)
A 		8.6
(-1.4)
A 		4.4
(-2.5)
A 		4.3
(-2.5)
A 		2.3
(-3)
A 		23
C 16.1
(-0.9)
A 		15.8
(-1)
A 		36.8
(3)
A 		8.5
(-2.3)
A 		5
(-3)
A 		5.9
(-2.8)
A 		32
avr 27.7
(3) 		9
(-1.7) 		19.9
(1) 		6.4
(-2.3) 		6.5
(-2.3) 		3.8
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 7.5
(1)
A 		1.7
(-3)
A 		10.3
(3)
A 		10.1
(2.9)
A 		9
B 1.6
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		1.4
(1.9)
A 		1
C 1.3
(-2.9)
A 		1.8
(-2.6)
A 		1.1
(-3)
A 		11.3
(3)
A 		10
avr 3.5
(-0.9) 		1.3
(-3) 		4
(-0.4) 		7.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 7.7
(3)
A 		2.2
(-1.8)
A 		3.1
(-1)
A 		1.6
(-2.3)
A 		3.1
(-1)
A 		0.8
(-3)
A 		7
B 8.8
(3)
A 		1.7
(-2.4)
A 		2.1
(-2.1)
A 		1.2
(-2.8)
A 		1.7
(-2.4)
A 		0.9
(-3)
A 		8
C 6
(0.4)
A 		4.8
(-0.5)
A 		9.4
(3)
A 		1.7
(-2.9)
A 		1.6
(-3)
A 		2
(-2.7)
A 		8
avr 7.5
(3) 		2.9
(-1.4) 		4.9
(0.5) 		1.5
(-2.7) 		2.1
(-2.1) 		1.2
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192804_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17615
Sequence Type Exemplar sequence
Representative Public ID F46F2.1 NCBI
Target Description F46F2.1 /REP_DB=WormBase Gene ID /WP=CE05878 /TR=Q20469 /GB=CAA93773.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078129(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078129 NCBI Caenorhabditis elegans F46F2.1 (F46F2.1) mRNA, complete cds. 11/11 None
GENEFINDER00000014647 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15250726:15258928:1 10/11 None
SNAP00000014637 ENSEMBL cdna:SNAP chromosome:CEL140:X:15251238:15254616:1 10/11 None
F46F2.1 ENSEMBL cdna:known chromosome:CEL140:X:15250726:15253794:1 gene:F46F2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15250725-15253794(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Ensembl F46F2.1
Entrez Gene 185850 Entrez gene
SwissProt Q20469 EMBL-EBI
WormBase CE05878 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93773 Hypothetical protein F46F2.1 [Caenorhabditis elegans] ref|NP_510530.1| F46F2.1 [Caenorhabditis elegans] 0.0
blast AAC04439 Hypothetical protein T22B2.1 [Caenorhabditis elegans] ref|NP_508680.1| T22B2.1 [Caenorhabditis elegans] 0.0
blast AAC69348 Hypothetical protein Y73C8C.8 [Caenorhabditis elegans] ref|NP_503853.1| Y73C8C.8 [Caenorhabditis elegans] 0.0
blast CAA93774 Hypothetical protein F46F2.4 [Caenorhabditis elegans] ref|NP_510531.1| F46F2.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.5.MarR-like transcriptional regulators All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; MarR-like transcriptional regulators 6.59999990463257
Sequence
Target Sequence 
>C. ELEGANS:192804_AT
caaaaccaaccaaattcctgagctccgaaagttcccaacgttctgtgatgaatttgtaag
cgcttataagaataccttgaaagaagatgctcctatcatttgtgctgaactcctgagcac
ttcaaacactccaaaatcttcatcctccgacgagcttgaagataatgaatgtcttgtctg
cctggaagacatggaaacagaacaagaaacaatgaagtgcttgacctgcaaacggcaata
tcattctgcatgtgttcgaaaatggttcaaagtcaaaagaatttgtccaacctgtgacgc
agggctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAACCAACCAAATTCCTGAGCTC 594 189 1998 Antisense
TCCGAAAGTTCCCAACGTTCTGTGA 316 595 2021 Antisense
GAAGATGCTCCTATCATTTGTGCTG 191 339 2080 Antisense
CTATCATTTGTGCTGAACTCCTGAG 213 223 2090 Antisense
AACTCCTGAGCACTTCAAACACTCC 278 141 2105 Antisense
CAAACACTCCAAAATCTTCATCCTC 640 191 2120 Antisense
TCTTCATCCTCCGACGAGCTTGAAG 332 617 2134 Antisense
TAATGAATGTCTTGTCTGCCTGGAA 124 637 2160 Antisense
GAAGTGCTTGACCTGCAAACGGCAA 353 335 2211 Antisense
GCAAACGGCAATATCATTCTGCATG 169 319 2225 Antisense
TGTCCAACCTGTGACGCAGGGCTGC 150 557 2281 Antisense
Sequence Source Affymetrix Proprietary Database