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[192803_at] Zinc finger, C3HC4 type (RING finger)

Description C01G6.4 /REP_DB=WormBase Gene ID /WP=CE00866 /TR=Q17573 /GB=CAA84635.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 93      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 82      6grp_total > 95      4grp_total > 11      6grp_high1_sub > 04      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 383
1 2 3 4 range
A 368.9
(-1.2)
P 		317.4
(-2)
P 		254.1
(-3)
P 		637
(3)
P 		383
B 322.1
(-2.8)
P 		352.1
(-2.1)
P 		312
(-3)
P 		576.9
(3)
P 		265
C 360.1
(-1.2)
P 		387.3
(-0.4)
P 		297.5
(-3)
P 		508.7
(3)
P 		211
avr 350.4
(-1.7) 		352.3
(-1.7) 		287.9
(-3) 		574.2
(3) 		286

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 270
1 2 3 4 5 6 range
A 270.6
(-3)
P 		353.5
(-1)
P 		305.2
(-2.2)
P 		374.5
(-0.5)
P 		441.8
(1.1)
P 		523.8
(3)
P 		253
B 335.7
(-0.7)
P 		253.5
(-3)
P 		365.6
(0.1)
P 		467.4
(3)
P 		381.2
(0.6)
P 		402.9
(1.2)
P 		214
C 404.6
(1.8)
P 		273.9
(-3)
P 		335.1
(-0.7)
P 		358.9
(0.1)
P 		436.2
(3)
P 		312.9
(-1.6)
P 		162
avr 337
(-0.9) 		293.6
(-3) 		335.3
(-1) 		400.3
(2.1) 		419.7
(3) 		413.2
(2.7) 		126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 134.3
(3)
P 		68.9
(-2.8)
P 		66.4
(-3)
P 		93.2
(-0.6)
P 		68
B 102.7
(0.6)
P 		87
(-1.3)
P 		72.3
(-3)
P 		122.9
(3)
P 		51
C 119.2
(3)
P 		111.3
(1.6)
P 		103.7
(0.2)
P 		85.8
(-3)
P 		33
avr 118.7
(3) 		89.1
(-1.7) 		80.8
(-3) 		100.6
(0.1) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 49.9
(-3)
P 		125.7
(2.5)
P 		66.5
(-1.8)
P 		95
(0.2)
P 		133.3
(3)
P 		127.5
(2.6)
P 		83
B 116.8
(-0.2)
P 		84.4
(-3)
P 		88.8
(-2.6)
P 		123.8
(0.4)
P 		154.9
(3)
P 		150.2
(2.6)
P 		71
C 150
(3)
P 		83.6
(-2.1)
P 		85.3
(-2)
P 		72.2
(-3)
P 		141.2
(2.3)
P 		104.8
(-0.5)
P 		78
avr 105.6
(-0.6) 		97.9
(-1.3) 		80.2
(-3) 		97
(-1.4) 		143.1
(3) 		127.5
(1.5) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192803_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3697
Sequence Type Exemplar sequence
Representative Public ID C01G6.4 NCBI
Target Description C01G6.4 /REP_DB=WormBase Gene ID /WP=CE00866 /TR=Q17573 /GB=CAA84635.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063575(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063575 NCBI Caenorhabditis elegans C01G6.4 (C01G6.4) mRNA, complete cds. 11/11 None
SNAP00000013217 ENSEMBL cdna:SNAP chromosome:CEL140:II:9271637:9272935:-1 11/11 None
GENEFINDER00000013245 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9271637:9272935:-1 11/11 None
C01G6.4 ENSEMBL cdna:known chromosome:CEL140:II:9271210:9272953:-1 gene:C01G6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9271633-9272932(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Ensembl C01G6.4
Entrez Gene 182077 Entrez gene
SwissProt Q17573 EMBL-EBI
WormBase CE00866 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1641464_S_AT dm
DROSOPHILA_2:1636015_S_AT dm
CHICKEN:GGA.11993.1.S1_S_AT ring finger protein 11 gga
CHICKEN:GGAAFFX.12331.1.S1_AT ring finger protein 11 gga
HG-FOCUS:208924_AT ring finger protein 11 hs
HG-U133A:208924_AT ring finger protein 11 hs
HG-U133_PLUS_2:208924_AT ring finger protein 11 hs
HG-U133A_2:208924_AT ring finger protein 11 hs
HU35KSUBA:AA249175_AT ring finger protein 11 hs
HU35KSUBD:RC_AA452241_AT ring finger protein 11 hs
U133_X3P:G5931544_3P_AT ring finger protein 11 hs
HG-U95AV2:39150_AT ring finger protein 11 hs
U133_X3P:HS.260287.0.A1_3P_AT Ring finger protein 11 hs
MU11KSUBA:AA175164_AT ring finger protein 11 mm
MG-U74AV2:160205_F_AT ring finger protein 11 mm
MG-U74CV2:168087_R_AT ring finger protein 11 mm
MOE430A:1452058_A_AT ring finger protein 11 mm
MOUSE430A_2:1452058_A_AT ring finger protein 11 mm
MOUSE430_2:1452058_A_AT ring finger protein 11 mm
MOE430A:1426405_AT ring finger protein 11 mm
MOUSE430A_2:1426405_AT ring finger protein 11 mm
MOUSE430_2:1426405_AT ring finger protein 11 mm
MOE430A:1426404_A_AT ring finger protein 11 mm
MOUSE430A_2:1426404_A_AT ring finger protein 11 mm
MOUSE430_2:1426404_A_AT ring finger protein 11 mm
MOE430B:1439685_AT Ring finger protein 11, mRNA (cDNA clone MGC:40706 IMAGE:4972336) mm
MOUSE430_2:1439685_AT Ring finger protein 11, mRNA (cDNA clone MGC:40706 IMAGE:4972336) mm
MG-U74BV2:114971_AT Ring finger protein 11, mRNA (cDNA clone MGC:40706 IMAGE:4972336) mm
MOE430B:1442048_AT Ring finger protein 11, mRNA (cDNA clone MGC:40706 IMAGE:4972336) mm
MOUSE430_2:1442048_AT Ring finger protein 11, mRNA (cDNA clone MGC:40706 IMAGE:4972336) mm
MU19KSUBC:TC37378_AT Ring finger protein 11, mRNA (cDNA clone MGC:40706 IMAGE:4972336) mm
RAE230B:1398650_AT similar to Nedd4 WW domain-binding protein 2 rn
RAT230_2:1398650_AT similar to Nedd4 WW domain-binding protein 2 rn
Protein Similarities
Method ID Description E-Value
blast CAA84635 Hypothetical protein C01G6.4 [Caenorhabditis elegans] ref|NP_495976.1| C01G6.4 [Caenorhabditis elegans] 8.0E-96
blast CAE57845 Hypothetical protein CBG00875 [Caenorhabditis briggsae] 1.0E-83
blast AAH97155 Hypothetical protein LOC619251 [Danio rerio] ref|NP_001028905.1| hypothetical protein LOC619251 [Danio rerio] 6.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 6.2E-16
Sequence
Target Sequence 
>C. ELEGANS:192803_AT
cagacagcacgatgagacgccactacgacggagccgatcatcagacgcagcgatgagctt
cacaaatccgtcaatgatgcaacaaagcagttcgtacgtaaatcagctctatcaacacaa
cgtaattagacaacgacaagcacaggaacagggaaaagaactcgacgaagcaaaaaaaaa
ccgaattcgaggacttctcgagcaaatccctgctgatgtatttcgaggagatatgaccag
taatgaatgtgccatctgtatgatcgactttgagccaggagagagaatccgattccttcc
ttgcatgcactcgtttcatcaagaatgcgtcgacgaatggcttatgaagtcattcacatg
tccttcgtgccttgaaccagtcgattcaaccatactttcctcgttaactgcccataatat
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGACAGCACGATGAGACGCCACTA 381 205 48 Antisense
GCCACTACGACGGAGCCGATCATCA 353 279 66 Antisense
AAATCAGCTCTATCAACACAACGTA 579 117 147 Antisense
CGAGGACTTCTCGAGCAAATCCCTG 248 249 235 Antisense
GAATGTGCCATCTGTATGATCGACT 593 331 292 Antisense
GAGAGAATCCGATTCCTTCCTTGCA 336 395 328 Antisense
CCTTGCATGCACTCGTTTCATCAAG 456 269 346 Antisense
GAAGTCATTCACATGTCCTTCGTGC 51 337 393 Antisense
CTTCGTGCCTTGAACCAGTCGATTC 219 221 410 Antisense
TCGATTCAACCATACTTTCCTCGTT 56 603 428 Antisense
TTCCTCGTTAACTGCCCATAATATG 54 697 444 Antisense
Sequence Source Affymetrix Proprietary Database