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[192801_at] Zinc finger, C3HC4 type (RING finger)

Description Y7A9C.1 /REP_DB=WormBase Gene ID /WP=CE14846 /TR=O18257 /GB=CAB16542.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_high1_10_10 > 53      6grp_total > 30      4grp_total > 55      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 120.2
(-3)
P 		120.2
(-3)
A 		126.7
(1.3)
P 		129.2
(3)
A 		9
B 178
(3)
P 		83.3
(-1.5)
A 		147.3
(1.5)
A 		52.7
(-3)
A 		125
C 260.8
(3)
P 		135.3
(-2.3)
A 		139.3
(-2.2)
A 		119.6
(-3)
M 		141
avr 186.3
(3) 		112.9
(-2.1) 		137.8
(-0.4) 		100.5
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 158.7
(-0.6)
A 		214.5
(1.7)
P 		244.9
(3)
P 		150.4
(-1)
P 		102.1
(-3)
A 		129.3
(-1.9)
P 		143
B 114.7
(-1.3)
P 		168.7
(1.7)
P 		158.6
(1.1)
P 		193
(3)
P 		83.5
(-3)
P 		123.4
(-0.8)
P 		110
C 132
(-1)
P 		178.2
(1.6)
P 		202.6
(3)
P 		165.8
(0.9)
A 		95.9
(-3)
P 		100.1
(-2.8)
P 		107
avr 135.1
(-0.7) 		187.1
(2.2) 		202
(3) 		169.7
(1.2) 		93.8
(-3) 		117.6
(-1.7) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 43.8
(3)
P 		26.1
(-1.3)
A 		33.1
(0.4)
P 		18.9
(-3)
A 		25
B 56.7
(3)
P 		20.6
(-1.8)
A 		34.1
(0)
A 		11.2
(-3)
A 		46
C 86.3
(3)
P 		38.9
(-1.3)
A 		48.5
(-0.4)
A 		20.2
(-3)
M 		66
avr 62.3
(3) 		28.5
(-1.5) 		38.6
(-0.1) 		16.8
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 29.2
(-3)
A 		76.3
(3)
P 		53.3
(0.1)
P 		38.1
(-1.9)
P 		30.8
(-2.8)
A 		31.5
(-2.7)
P 		47
B 39.9
(-1.4)
P 		56.2
(3)
P 		38.5
(-1.8)
P 		51.1
(1.6)
P 		33.9
(-3)
P 		46
(0.3)
P 		22
C 48.9
(1.6)
P 		54.4
(3)
P 		51.6
(2.3)
P 		33.3
(-2.4)
A 		31
(-3)
P 		33.5
(-2.4)
P 		23
avr 39.3
(-1.5) 		62.3
(3) 		47.8
(0.1) 		40.8
(-1.2) 		31.9
(-3) 		37
(-2) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192801_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9119
Sequence Type Exemplar sequence
Representative Public ID Y7A9C.1 NCBI
Target Description Y7A9C.1 /REP_DB=WormBase Gene ID /WP=CE14846 /TR=O18257 /GB=CAB16542.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070533(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070533 NCBI Caenorhabditis elegans Y7A9C.1 (Y7A9C.1) mRNA, complete cds. 11/11 None
SNAP00000008972 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16294812:16298166:1 11/11 None
GENEFINDER00000008974 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16293325:16305362:1 10/11 None
Y7A9C.1 ENSEMBL cdna:known chromosome:CEL140:IV:16294115:16298613:1 gene:Y7A9C.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16294120-16298172(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Ensembl Y7A9C.1
Entrez Gene 189395 Entrez gene
SwissProt O18257 EMBL-EBI
WormBase CE35699 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16542 Hypothetical protein Y7A9C.1 [Caenorhabditis elegans] ref|NP_502934.2| Y7A9C.1 [Caenorhabditis elegans] 0.0
blast AAY86296 Hypothetical protein Y54G2A.40 [Caenorhabditis elegans] 1.0E-167
blast AAY86296 Hypothetical protein Y54G2A.40 [Caenorhabditis elegans] 1.0E-140
blast AAY86296 Hypothetical protein Y54G2A.40 [Caenorhabditis elegans] 1.0E-130
blast CAH60792 Hypothetical protein Y7A9C.7 [Caenorhabditis elegans] ref|NP_001023586.1| Serpentine Receptor, class Z family member (srz-72) [Caenorhabditis elegans] 1.0E-120
blast AAA81480 Hypothetical protein F42C5.4 [Caenorhabditis elegans] ref|NP_501162.1| F42C5.4 [Caenorhabditis elegans] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 3.0E-44
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 8.0E-11
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 6.6E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008974 10 621-638,651-673,698-717,729-751,771-793,800-822,842-864,908-926,946-968,1045-1067
Sequence
Target Sequence 
>C. ELEGANS:192801_AT
tgtccacatgtgccgagtgttgggacgaagaaccgcataagtgtggcatctgtgacgatg
ctactacaagctcgcgaaccgatcccgatattgttgttttggaactagtgaaacattata
aagaaaactgtatttcacttcttgaagcgtggtgggagtgtgatgccgctcaacttggct
tctgcctgaactgtgcctcgtatacagaagatcttgagatttgcgtctactgcgaactag
atgttgagcgaagcgctttgaaaaccgaagtagaaacatcagcggaattcacaaaagata
tgcaacttcggttcacgtacaaggggctcagcgggttcccaatgcgttggcagtgctcgg
attgtacaactcgacatcggaagcctacagcagacgtttggaacaaaggatgcaatcatt
tccgttacagaagcatgtatgcaagcgtttcaagtgagtgctttgcacataatcataaat
cgccttgtctccgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCCACATGTGCCGAGTGTTGGGA 311 557 1022 Antisense
GAACCGCATAAGTGTGGCATCTGTG 174 347 1051 Antisense
GACGATGCTACTACAAGCTCGCGAA 226 379 1075 Antisense
GCGAACCGATCCCGATATTGTTGTT 125 289 1095 Antisense
GAGTGTGATGCCGCTCAACTTGGCT 186 401 1177 Antisense
AACTTGGCTTCTGCCTGAACTGTGC 242 139 1193 Antisense
GAGATTTGCGTCTACTGCGAACTAG 352 397 1237 Antisense
GATATGCAACTTCGGTTCACGTACA 267 421 1318 Antisense
GGCAGTGCTCGGATTGTACAACTCG 591 535 1370 Antisense
ACTCGACATCGGAAGCCTACAGCAG 199 97 1390 Antisense
ATCATAAATCGCCTTGTCTCCGACT 150 29 1493 Antisense
Sequence Source Affymetrix Proprietary Database