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[192800_s_at] 40S ribosomal protein S26

Description F39B2.6 /REP_DB=WormBase Gene ID /WP=CE16012 /GEN=rps-26 /TR=O45499 /GB=CAB07387.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=40S ribosomal protein S26
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 20      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 09      6grp_total > 50      4grp_total > 17      6grp_cgc > 71      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15751
1 2 3 4 range
A 22839.4
(-3)
P 		30632.1
(0.1)
P 		28469.5
(-0.8)
P 		37877
(3)
P 		15038
B 24627.6
(-3)
P 		25121.8
(-2.4)
P 		27121
(-0.2)
P 		29907.1
(3)
P 		5280
C 22125.8
(-3)
P 		25361.5
(-1.4)
P 		22176.3
(-3)
P 		34491
(3)
P 		12365
avr 23197.6
(-3) 		27038.5
(-0.9) 		25922.3
(-1.5) 		34091.7
(3) 		10894

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11789
1 2 3 4 5 6 range
A 29067.7
(3)
P 		22047.4
(-1.1)
P 		24826.8
(0.5)
P 		23297.1
(-0.4)
P 		18732.4
(-3)
P 		23038.1
(-0.5)
P 		10335
B 19608.7
(-1)
P 		21025.4
(0.3)
P 		24194.6
(3)
P 		21040.7
(0.3)
P 		17278.4
(-3)
P 		17329.8
(-3)
P 		6916
C 20446.8
(-1.3)
P 		21849.9
(-0)
P 		24237.5
(2.1)
P 		25239.9
(3)
P 		21036.3
(-0.8)
P 		18533.1
(-3)
P 		6707
avr 23041.1
(1.5) 		21640.9
(-0.1) 		24419.6
(3) 		23192.6
(1.6) 		19015.7
(-3) 		19633.7
(-2.3) 		5404
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2771
1 2 3 4 range
A 8315.8
(3)
P 		6649.4
(-0.6)
P 		7442.5
(1.1)
P 		5544.4
(-3)
P 		2771
B 7853.5
(3)
P 		6204.5
(-3)
P 		6284.6
(-2.7)
P 		6373.2
(-2.4)
P 		1649
C 7324.3
(1.7)
P 		7291.6
(1.6)
P 		7729.1
(3)
P 		5815.7
(-3)
P 		1913
avr 7831.2
(3) 		6715.2
(-0.5) 		7152.1
(0.9) 		5911.1
(-3) 		1920

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2765
1 2 3 4 5 6 range
A 5358.4
(-3)
P 		7841.1
(3)
P 		5406.8
(-2.9)
P 		5908.7
(-1.7)
P 		5652.6
(-2.3)
P 		5609.1
(-2.4)
P 		2483
B 6822.9
(2.2)
P 		6998.5
(2.9)
P 		5875.2
(-1.7)
P 		5573
(-3)
P 		7020
(3)
P 		6462.2
(0.7)
P 		1447
C 7578.7
(3)
P 		6667.1
(0.8)
P 		6168.9
(-0.4)
P 		5075.8
(-3)
P 		6807
(1.2)
P 		6204.1
(-0.3)
P 		2503
avr 6586.7
(0.9) 		7168.9
(3) 		5817
(-1.9) 		5519.2
(-3) 		6493.2
(0.5) 		6091.8
(-0.9) 		1650
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192800_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1375
Sequence Type Exemplar sequence
Representative Public ID F39B2.6 NCBI
Target Description F39B2.6 /REP_DB=WormBase Gene ID /WP=CE16012 /GEN=rps-26 /TR=O45499 /GB=CAB07387.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=40S ribosomal protein S26
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061170(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061170 NCBI Caenorhabditis elegans Ribosomal Protein, Small subunit family member (rps-26) (rps-26) mRNA, complete cds. 11/11 None
SNAP00000018499 ENSEMBL cdna:SNAP chromosome:CEL140:I:14768054:14768664:1 11/11 None
GENEFINDER00000018519 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14768054:14768664:1 11/11 None
F39B2.6.1 ENSEMBL cdna:known chromosome:CEL140:I:14768038:14768780:1 gene:F39B2.6 11/11 None
F39B2.6.2 ENSEMBL cdna:known chromosome:CEL140:I:14768048:14768781:1 gene:F39B2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14767984-14768595(+) 100.0 100.0
Public Domain and Genome References
Gene Title 40S ribosomal protein S26
Gene Symbol rps-26
Ensembl F39B2.6
Entrez Gene 173342 Entrez gene
SwissProt O45499 EMBL-EBI
WormBase CE16012 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:12809_G_AT 40S ribosomal protein S26 (RPS26A) at
ATGENOME1:12808_AT 40S ribosomal protein S26 (RPS26A) at
ATH1-121501:255819_S_AT 40S ribosomal protein S26 (RPS26A) at
HG-U133_PLUS_2:217753_S_AT similar to 40S ribosomal protein S26 hs
HG-U133A_2:217753_S_AT similar to 40S ribosomal protein S26 hs
HG-U133A:217753_S_AT similar to 40S ribosomal protein S26 hs
HG-FOCUS:217753_S_AT similar to 40S ribosomal protein S26 hs
HUGENEFL:X69654_AT similar to 40S ribosomal protein S26 hs
HUGENEFL:L76568_XPT3_F_AT similar to 40S ribosomal protein S26 hs
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07387 Hypothetical protein F39B2.6 [Caenorhabditis elegans] ref|NP_493571.1| Ribosomal Protein, Small subunit family member (rps-26) [Caenorhabditis elegans] sp|O45499|RS26_CAEEL 40S ribosomal protein S26 6.0E-34
blast CAE72577 Hypothetical protein CBG19764 [Caenorhabditis briggsae] 1.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR000892 EMBL-EBI Ribosomal protein S26E 8.0E-64
Sequence
Target Sequence 
>C. ELEGANS:192800_S_AT
gacgctgctgcccaaaggataaggccatcaagaagttcgttgtcagaaacatcgttgagg
ctgccgccgttagagacatcggagatgcttctgcttacacccagtatgctcttccaaagc
tctaccacaagctccattactgcatcgcctgcgccatccacagcaaggtcgtcagaaatc
gttcccgtgaggccagaagagatcgcaaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCTGCTGCCCAAAGGATAAGGC 363 379 92 Antisense
AAGGCCATCAAGAAGTTCGTTGTCA 265 161 112 Antisense
GAAGTTCGTTGTCAGAAACATCGTT 13 337 123 Antisense
CAGAAACATCGTTGAGGCTGCCGCC 302 205 135 Antisense
GCTGCCGCCGTTAGAGACATCGGAG 471 297 151 Antisense
CTCTTCCAAAGCTCTACCACAAGCT 78 229 200 Antisense
TACCACAAGCTCCATTACTGCATCG 20 651 214 Antisense
CCATCCACAGCAAGGTCGTCAGAAA 668 271 245 Antisense
CAAGGTCGTCAGAAATCGTTCCCGT 252 183 255 Antisense
ATCGTTCCCGTGAGGCCAGAAGAGA 554 35 269 Antisense
GTGAGGCCAGAAGAGATCGCAACCC 598 481 278 Antisense
Sequence Source Affymetrix Proprietary Database