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[192797_s_at]

Description F11A1.3 /REP_DB=WormBase Gene ID /WP=CE03181 /CHR=X /FEA=Sanger Annotation /DEF=locus:daf-12 nuclear hormone receptor (HINXTON) TR:Q19333 protein_id:CAA90719.1
Cluster 6grp_high1_10_10 > 74      4grp_highest_8_8 > 15      4grp_high_8_8 > 21      6grp_total > 64      4grp_total > 10      6grp_cgc > 56      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 121.7
(-2.3)
P 		143.3
(-1.6)
P 		101.9
(-3)
P 		280
(3)
P 		178
B 123.1
(-2.3)
P 		136.6
(-1.9)
P 		101
(-3)
P 		288.6
(3)
P 		188
C 97.5
(-3)
P 		138.1
(-1.5)
P 		141.2
(-1.4)
P 		257.2
(3)
P 		160
avr 114.1
(-3) 		139.3
(-2.1) 		114.7
(-3) 		275.3
(3) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 74.9
(-2.9)
A 		120.3
(-1.1)
P 		151.5
(0.1)
P 		134.1
(-0.6)
P 		72.2
(-3)
P 		224.2
(3)
P 		152
B 75.7
(-2.8)
P 		122.3
(-0.8)
P 		210.6
(3)
P 		168.1
(1.2)
P 		70.3
(-3)
P 		168.3
(1.2)
P 		140
C 32.2
(-3)
P 		100.2
(-0.6)
P 		204.7
(3)
P 		115.4
(-0.1)
P 		86.2
(-1.1)
P 		155.1
(1.3)
P 		173
avr 60.9
(-3) 		114.3
(-0.5) 		188.9
(3) 		139.2
(0.7) 		76.2
(-2.3) 		182.5
(2.7) 		128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 44.3
(3)
P 		31.1
(-1.5)
P 		26.6
(-3)
P 		41
(1.9)
P 		18
B 39.2
(-0.5)
P 		33.7
(-1.4)
P 		23.4
(-3)
P 		61.5
(3)
P 		38
C 32.3
(-3)
P 		39.7
(-0.4)
P 		49.2
(3)
P 		43.4
(0.9)
P 		17
avr 38.6
(-0.9) 		34.8
(-2.3) 		33.1
(-3) 		48.6
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 13.8
(-3)
A 		42.8
(1.3)
P 		33
(-0.2)
P 		34
(-0)
P 		21.8
(-1.8)
P 		54.6
(3)
P 		41
B 26.3
(-3)
P 		40.7
(-0.6)
P 		51.1
(1.1)
P 		44.5
(-0)
P 		28.6
(-2.6)
P 		62.7
(3)
P 		36
C 11.9
(-3)
P 		30.6
(-0.2)
P 		52.1
(3)
P 		23.2
(-1.3)
P 		27.9
(-0.6)
P 		51.9
(3)
P 		40
avr 17.3
(-3) 		38
(0.2) 		45.4
(1.3) 		33.9
(-0.5) 		26.1
(-1.6) 		56.4
(3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192797_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16585
Sequence Type Exemplar sequence
Representative Public ID F11A1.3 NCBI
Target Description F11A1.3 /REP_DB=WormBase Gene ID /WP=CE03181 /CHR=X /FEA=Sanger Annotation /DEF=locus:daf-12 nuclear hormone receptor (HINXTON) TR:Q19333 protein_id:CAA90719.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029376(11), NM_001029377(11), NM_001029378(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029376 NCBI Caenorhabditis elegans abnormal DAuer Formation family member (daf-12) (daf-12) mRNA, complete cds. 11/11 None
NM_001029377 NCBI Caenorhabditis elegans abnormal DAuer Formation family member (daf-12) (daf-12) mRNA, complete cds. 11/11 None
NM_001029378 NCBI Caenorhabditis elegans abnormal DAuer Formation family member (daf-12) (daf-12) mRNA, complete cds. 11/11 None
SNAP00000033798 ENSEMBL cdna:SNAP chromosome:CEL140:X:10663190:10665406:1 11/11 None
GENEFINDER00000033799 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10664588:10665406:1 11/11 None
F11A1.3a ENSEMBL cdna:known chromosome:CEL140:X:10644332:10666794:1 gene:F11A1.3 11/11 A 
F11A1.3b ENSEMBL cdna:known chromosome:CEL140:X:10659265:10665406:1 gene:F11A1.3 11/11 None
F11A1.3c ENSEMBL cdna:known chromosome:CEL140:X:10664331:10665406:1 gene:F11A1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10660390-10665406(+) 100.0 100.0
Public Domain and Genome References
Ensembl F11A1.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42284 Hypothetical protein F11A1.3a [Caenorhabditis elegans] ref|NP_001024547.1| abnormal DAuer Formation family member (daf-12) [Caenorhabditis elegans] gb|AAD34462.1| DAF-12 A1 [Caenorhabditis elegans] 0.0
blast CAC42283 Hypothetical protein F11A1.3b [Caenorhabditis elegans] ref|NP_001024548.1| abnormal DAuer Formation family member (daf-12) [Caenorhabditis elegans] gb|AAD34463.1| DAF-12 A2 [Caenorhabditis elegans] 0.0
blast T20733 hypothetical protein F11A1.3 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.8E-5
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.4E-36
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.8E-5
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.4E-36
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.8E-5
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.8E-5
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.8E-5
Sequence
Target Sequence 
>C. ELEGANS:192797_S_AT
ggatgttaccatgaggcgtttcgtcaaagttgccaaaggtgttccggcgttccgtgaggt
atctcaggaaggaaagttttcgcttctcaaggggggaatgattgaaatgctgacagtccg
tggtgtgacccgctacgacgcttcgaccaactctttcaagacaccaacaattaaggggca
aaacgtttccgtcaacgtggatgatatgtttgctaaattgaatgcaaatgcacaagctca
gaaagctaaatgtttagagttcttcggtttcttcgacgaggagattaaaaagaatgaact
tgccgtttatctagtcatgttggctgttctcttctctgtccgctctgatcctccgatgaa
cgaaaacgatgttcgcatcgttacagaacgacataatcatttcatgagtcttctcaacag
atatttggaatcgttgttcggagagcaggcccgccgtatctttgaacggattccaaaagc
actgggattacttaatgaaattgctcgtaatgctggaatgctgttcatgggaactgtgcg
ttctggtgaagccgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGTTACCATGAGGCGTTTCGTC 160 515 1680 Antisense
TTCCGGCGTTCCGTGAGGTATCTCA 243 697 1721 Antisense
AATGCTGACAGTCCGTGGTGTGACC 98 167 1785 Antisense
GCTTCGACCAACTCTTTCAAGACAC 458 305 1819 Antisense
TAGAGTTCTTCGGTTTCTTCGACGA 451 653 1934 Antisense
GAACTTGCCGTTTATCTAGTCATGT 53 351 1975 Antisense
ATCTAGTCATGTTGGCTGTTCTCTT 609 31 1988 Antisense
GCTCTGATCCTCCGATGAACGAAAA 547 299 2021 Antisense
GAATCGTTGTTCGGAGAGCAGGCCC 436 327 2107 Antisense
GCCCGCCGTATCTTTGAACGGATTC 145 285 2128 Antisense
AACTGTGCGTTCTGGTGAAGCCGAA 311 143 2211 Antisense
Sequence Source Affymetrix Proprietary Database