[Home] | [Total List]

[192796_at] tyrosine specific protein phosphatase

Description T23G7.5 /REP_DB=WormBase Gene ID /WP=CE03706 /TR=Q22707 /GB=CAA92703.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=tyrosine specific protein phosphatase
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 98      6grp_total > 76      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4592
1 2 3 4 range
A 790.3
(-2.7)
P 		835.4
(-2.6)
P 		596.1
(-3)
P 		4642.6
(3)
P 		4047
B 863.8
(-2.7)
P 		737.6
(-2.9)
P 		672.4
(-3)
P 		5187.8
(3)
P 		4515
C 844.4
(-2.7)
P 		677
(-3)
P 		657.1
(-3)
P 		4894.4
(3)
P 		4237
avr 832.8
(-2.7) 		750
(-2.8) 		641.9
(-3) 		4908.3
(3) 		4266

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1223
1 2 3 4 5 6 range
A 842.5
(-2.9)
P 		832.3
(-3)
P 		1088.8
(-1.3)
P 		1141.6
(-0.9)
P 		1254.6
(-0.2)
P 		1737.1
(3)
P 		905
B 820.6
(-3)
P 		860.7
(-2.7)
P 		1085.5
(-1.1)
P 		1100.9
(-1)
P 		1190.9
(-0.4)
P 		1666.6
(3)
P 		846
C 743.6
(-3)
P 		815.9
(-2.6)
P 		1006.8
(-1.7)
P 		1323.3
(-0.2)
P 		1101.4
(-1.2)
P 		1966.2
(3)
P 		1223
avr 802.2
(-3) 		836.3
(-2.8) 		1060.4
(-1.4) 		1188.6
(-0.7) 		1182.3
(-0.7) 		1790
(3) 		988
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 950
1 2 3 4 range
A 287.7
(-1.5)
P 		181.3
(-2.7)
P 		155.8
(-3)
P 		679.6
(3)
P 		524
B 275.5
(-2.2)
P 		182.2
(-2.8)
P 		155.8
(-3)
P 		1105.5
(3)
P 		950
C 279.5
(-2.2)
P 		194.6
(-3)
P 		229
(-2.7)
P 		825.3
(3)
P 		631
avr 280.9
(-2.1) 		186
(-2.9) 		180.2
(-3) 		870.1
(3) 		690

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 503
1 2 3 4 5 6 range
A 155.3
(-3)
P 		296
(0.2)
P 		237.1
(-1.2)
P 		289.5
(0)
P 		378.6
(2)
P 		422.9
(3)
P 		268
B 285.5
(-2.6)
P 		286.5
(-2.6)
P 		263.6
(-3)
P 		291.6
(-2.5)
P 		483.8
(0.7)
P 		621.5
(3)
P 		358
C 275.6
(-2.6)
P 		249
(-3)
P 		256.3
(-2.9)
P 		266.1
(-2.7)
P 		356.4
(-1.4)
P 		658.2
(3)
P 		409
avr 238.8
(-3) 		277.2
(-2.3) 		252.3
(-2.8) 		282.4
(-2.2) 		406.3
(0.1) 		567.5
(3) 		329
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192796_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3284
Sequence Type Exemplar sequence
Representative Public ID T23G7.5 NCBI
Target Description T23G7.5 /REP_DB=WormBase Gene ID /WP=CE03706 /TR=Q22707 /GB=CAA92703.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=tyrosine specific protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063558(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063558 NCBI Caenorhabditis elegans T23G7.5 (T23G7.5) mRNA, complete cds. 11/11 None
SNAP00000032785 ENSEMBL cdna:SNAP chromosome:CEL140:II:9172991:9178343:1 11/11 None
GENEFINDER00000032790 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9177294:9178343:1 11/11 None
T23G7.5 ENSEMBL cdna:known chromosome:CEL140:II:9177210:9178343:1 gene:T23G7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9177206-9178340(+) 96.18 100.0
Public Domain and Genome References
Gene Title tyrosine specific protein phosphatase
Ensembl T23G7.5
Entrez Gene 174460 Entrez gene
SwissProt Q22707 EMBL-EBI
WormBase CE03706 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604312_AT similar to RNA/RNP complex-1 intereracting phosphatase (Phosphatase that interacts with RNA/RNP complex 1) (Dual specificity protein phosphatase 11) cfa
CANINE_2:CFA.21293.1.S1_S_AT similar to RNA/RNP complex-1 intereracting phosphatase (Phosphatase that interacts with RNA/RNP complex 1) (Dual specificity protein phosphatase 11) cfa
CANINE_2:CFA.2435.1.S1_AT similar to RNA/RNP complex-1 intereracting phosphatase (Phosphatase that interacts with RNA/RNP complex 1) (Dual specificity protein phosphatase 11) cfa
CANINE_2:CFAAFFX.13906.1.S1_AT similar to RNA/RNP complex-1 intereracting phosphatase (Phosphatase that interacts with RNA/RNP complex 1) (Dual specificity protein phosphatase 11) cfa
DROSGENOME1:147032_AT dm
DROSOPHILA_2:1638898_AT dm
HG-U133_PLUS_2:202703_AT dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) hs
HG-FOCUS:202703_AT dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) hs
HG-U133A:202703_AT dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) hs
HG-U133A_2:202703_AT dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) hs
HU35KSUBB:RC_W42845_AT dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) hs
U133_X3P:G4503414_3P_AT dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) hs
HG-U95AV2:39727_AT dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) hs
HU35KSUBC:RC_AA114035_AT Dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) hs
HU35KSUBC:RC_C14820_AT Dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) hs
MU11KSUBA:AA718394_AT dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) mm
MU11KSUBA:AA718394_G_AT dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) mm
MG-U74AV2:94980_AT dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) mm
MG-U74BV2:111262_AT dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) mm
MG-U74BV2:106291_AT dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) mm
MOE430A:1452594_AT dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) mm
MOUSE430A_2:1452594_AT dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) mm
MOUSE430_2:1452594_AT dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) mm
MOE430A:1454785_AT dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) mm
MOUSE430A_2:1454785_AT dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) mm
MOUSE430_2:1454785_AT dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) mm
MG-U74CV2:137663_AT Dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) (Dusp11), mRNA mm
MU19KSUBA:TC21540_AT Dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) (Dusp11), mRNA mm
MU19KSUBB:TC28821_AT Dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) (Dusp11), mRNA mm
MU19KSUBC:TC37900_AT Dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) (Dusp11), mRNA mm
MU19KSUBC:TC40951_AT Dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) (Dusp11), mRNA mm
MU19KSUBC:TC40951_G_AT Dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) (Dusp11), mRNA mm
RG-U34C:RC_AI232489_AT dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) (predicted) rn
RAE230A:1376576_AT dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) (predicted) rn
RAT230_2:1376576_AT dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) (predicted) rn
RAE230B:1379998_AT Dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) (predicted) rn
RAT230_2:1379998_AT Dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) (predicted) rn
RG-U34B:RC_AA944411_AT Dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
8138 protein tyrosine/serine/threonine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92703 Hypothetical protein T23G7.5 [Caenorhabditis elegans] ref|NP_495959.1| T23G7.5 [Caenorhabditis elegans] 1.0E-144
blast CAA92703 Hypothetical protein T23G7.5 [Caenorhabditis elegans] ref|NP_495959.1| T23G7.5 [Caenorhabditis elegans] 1.0E-128
blast CAA92703 Hypothetical protein T23G7.5 [Caenorhabditis elegans] ref|NP_495959.1| T23G7.5 [Caenorhabditis elegans] 1.0E-119
blast CAE57881 Hypothetical protein CBG00927 [Caenorhabditis briggsae] 1.0E-97
blast CAE57881 Hypothetical protein CBG00927 [Caenorhabditis briggsae] 3.0E-95
blast AAH98712 Dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) [Rattus norvegicus] ref|NP_001020821.1| dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) [Rattus norvegicus] 4.0E-39
blast AAH98712 Dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) [Rattus norvegicus] ref|NP_001020821.1| dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) [Rattus norvegicus] 8.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR000340 EMBL-EBI Dual specificity protein phosphatase 5.9E-43
Pfam IPR000340 EMBL-EBI Dual specificity protein phosphatase 5.9E-43
Pfam IPR000340 EMBL-EBI Dual specificity protein phosphatase 5.9E-43
Sequence
Target Sequence 
>C. ELEGANS:192796_AT
gtcggccgtgatatcgatgggactcgatttgttccattcaaaacaccactagattcatca
ttcttcgatgggaaaaatatgcctgtggagcttcaatttggtgtaaaaacattgatttct
ctggcacaacaggctaataaacaaattggattggttatcgatctcacaaatacggataga
tattataaaaagacggaatgggcagatcacggagtcaagtatttgaaactcaattgcccc
ggtcacgaggtgaacgaacgagaagatcttgtgcaagacttcattaatgctgttaaggaa
tttgtgaacgataaagaaaacgatggaaaactgattggcgtacactgcactcatgggctc
aacagaacaggataccttatttgccggtatatgattgacgtggataattatagtgcatcc
gatgcgatttctatgtttgaatactaccgtggacatccaatggagcgggaacactacaaa
aaatcattgtacgaagctgaaaggaagaaaaaatacggaaaaagcagcggaaaaagcagc
ggaaactcagccgattccacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGGCCGTGATATCGATGGGACTC 519 465 199 Antisense
AACACCACTAGATTCATCATTCTTC 26 137 240 Antisense
ATGCCTGTGGAGCTTCAATTTGGTG 542 41 277 Antisense
GATTTCTCTGGCACAACAGGCTAAT 206 429 312 Antisense
GGAATGGGCAGATCACGGAGTCAAG 647 531 393 Antisense
GTATTTGAAACTCAATTGCCCCGGT 425 447 417 Antisense
TTGCCCCGGTCACGAGGTGAACGAA 150 697 432 Antisense
AAACTGATTGGCGTACACTGCACTC 192 127 526 Antisense
TACACTGCACTCATGGGCTCAACAG 239 643 539 Antisense
GTTTGAATACTACCGTGGACATCCA 477 451 633 Antisense
AGCGGAAACTCAGCCGATTCCACAA 398 65 736 Antisense
Sequence Source Affymetrix Proprietary Database