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[192793_s_at]

Description W02B9.1 /REP_DB=WormBase Gene ID /WP=CE25133 /GEN=hmr-1 /TR=O44327 /GB=CAB61036.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Cadherin, Laminin G domain
Cluster 6grp_total > 18      4grp_total > 53      6grp_cgc > 02      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 264
1 2 3 4 range
A 323.4
(3)
P 		277.7
(1.6)
A 		217.3
(-0.3)
A 		128.5
(-3)
A 		195
B 307.2
(3)
M 		273.9
(1.8)
A 		229.5
(0.1)
A 		145.5
(-3)
A 		162
C 350.7
(2.4)
P 		378.7
(3)
A 		226.5
(-0.5)
M 		115.1
(-3)
A 		264
avr 327.1
(3) 		310.1
(2.5) 		224.4
(-0.1) 		129.7
(-3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 539
1 2 3 4 5 6 range
A 223.4
(-0.8)
A 		388
(3)
P 		129.2
(-3)
A 		335.9
(1.8)
P 		242.6
(-0.4)
A 		335.5
(1.8)
P 		259
B 227.7
(3)
P 		205.5
(1.1)
A 		157.2
(-3)
A 		224.1
(2.7)
P 		183.5
(-0.8)
A 		165.5
(-2.3)
A 		71
C 668.3
(3)
P 		252.4
(-1.7)
A 		298.1
(-1.2)
A 		143.8
(-3)
A 		363.1
(-0.5)
P 		141.6
(-3)
A 		527
avr 373.1
(3) 		282
(-0.1) 		194.8
(-3) 		234.6
(-1.7) 		263.1
(-0.7) 		214.2
(-2.3) 		178
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 117.7
(3)
P 		60.3
(-0.5)
A 		56.8
(-0.7)
A 		18.8
(-3)
A 		99
B 98
(3)
M 		67.7
(0.3)
A 		53.2
(-1)
A 		31
(-3)
A 		67
C 116.1
(3)
P 		108.9
(2.6)
A 		78.9
(0.7)
M 		19.4
(-3)
A 		97
avr 110.6
(3) 		79
(0.8) 		63
(-0.3) 		23.1
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 41.2
(-2.3)
A 		138
(3)
P 		28.1
(-3)
A 		85.2
(0.1)
P 		73.2
(-0.5)
A 		81.7
(-0.1)
P 		110
B 79.2
(3)
P 		68.4
(1.4)
A 		38.2
(-3)
A 		59.3
(0.1)
P 		74.6
(2.3)
A 		61.7
(0.4)
A 		41
C 247.7
(3)
P 		77
(-1.7)
A 		75.9
(-1.7)
A 		28.9
(-3)
A 		117.5
(-0.6)
P 		47.4
(-2.5)
A 		219
avr 122.7
(3) 		94.5
(0.8) 		47.4
(-3) 		57.8
(-2.2) 		88.4
(0.3) 		63.6
(-1.7) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192793_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2009
Sequence Type Exemplar sequence
Representative Public ID W02B9.1 NCBI
Target Description W02B9.1 /REP_DB=WormBase Gene ID /WP=CE25133 /GEN=hmr-1 /TR=O44327 /GB=CAB61036.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Cadherin, Laminin G domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026479(11), NM_001026478(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026479 NCBI Caenorhabditis elegans W02B9.1b (cadherin) mRNA, complete cds. 11/11 None
NM_001026478 NCBI Caenorhabditis elegans W02B9.1a (cadherin) mRNA, complete cds. 11/11 None
SNAP00000017478 ENSEMBL cdna:SNAP chromosome:CEL140:I:11084497:11092178:-1 11/11 None
GENEFINDER00000017483 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11084497:11102457:-1 11/11 None
W02B9.1b ENSEMBL cdna:known chromosome:CEL140:I:11083883:11142792:-1 gene:W02B9.1 11/11 A 
W02B9.1a ENSEMBL cdna:known chromosome:CEL140:I:11083883:11102457:-1 gene:W02B9.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11084427-11102177(-) 100.0 100.0
Public Domain and Genome References
Ensembl W02B9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD27619 Hypothetical protein W02B9.1b [Caenorhabditis elegans] emb|CAD27620.1| Hypothetical protein W02B9.1b [Caenorhabditis elegans] emb|CAD27611.1| Hypothetical protein W02B9.1b [Caenorhabditis elegans] emb|CAC38842.1| HMR-1B protein [Caenorhabditis elegans] ref|NP_001021650.1| W02B9.1b [Caenorhabditis elegans] 0.0
blast CAE63494 Hypothetical protein CBG07964 [Caenorhabditis briggsae] 0.0
blast T27110 hypothetical protein Y52B11B.2 - Caenorhabditis elegans 0.0
blast CAB61036 Hypothetical protein W02B9.1a [Caenorhabditis elegans] ref|NP_001021649.1| W02B9.1a [Caenorhabditis elegans] gb|AAB94553.1| HMR-1 [Caenorhabditis elegans] 0.0
blast T26104 hypothetical protein W02B9.1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 2.6E-4
Pfam IPR001791 EMBL-EBI Laminin G 1.2E-18
Pfam IPR002126 EMBL-EBI Cadherin 1.2E-17
Pfam IPR002126 EMBL-EBI Cadherin 2.9E-6
Pfam IPR002126 EMBL-EBI Cadherin 3.7E-7
Pfam IPR002126 EMBL-EBI Cadherin 2.7E-7
Pfam IPR002126 EMBL-EBI Cadherin 2.0E-14
Pfam IPR002126 EMBL-EBI Cadherin 4.8E-15
Pfam IPR002126 EMBL-EBI Cadherin 3.2E-13
Pfam IPR002126 EMBL-EBI Cadherin 3.2E-17
Pfam IPR002126 EMBL-EBI Cadherin 2.3E-9
Pfam IPR002126 EMBL-EBI Cadherin 2.7E-17
Pfam IPR006209 EMBL-EBI EGF-like domain 2.6E-4
Pfam IPR002126 EMBL-EBI Cadherin 3.7E-12
Pfam IPR001791 EMBL-EBI Laminin G 1.2E-18
Pfam IPR006209 EMBL-EBI EGF-like domain 2.6E-4
Pfam IPR001791 EMBL-EBI Laminin G 1.2E-18
Pfam IPR006209 EMBL-EBI EGF-like domain 2.6E-4
Pfam IPR002126 EMBL-EBI Cadherin 2.1E-4
Pfam IPR002126 EMBL-EBI Cadherin 1.6E-11
Pfam IPR001791 EMBL-EBI Laminin G 1.2E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021650.1 1 2779-2801
NP_001021649.1 2 23-45,1082-1104
W02B9.1b 1 2779-2801
W02B9.1a 2 23-45,1082-1104
SNAP00000017478 1 793-815
GENEFINDER00000017483 1 1076-1098
Sequence
Target Sequence 
>C. ELEGANS:192793_S_AT
gatcttcgaatcacttgtgccgaccttccagccggttactgtggtggatcgttcgtctgt
gtcgatttctggaagggtccattctgtacgtgcaatgatggagccaacgcgattctcggt
gatgatggacaagttgtcggttgtggagagacgttggccgtgtcgaaactcggaattagc
tcaccggcgattattctgattcttgtctcgttggcgttgcttatactgttggttatgatg
atggttgtgtatacgagacgatcgcctggtgcatttgaaaatgttcggccggaggagatg
aatcgtgataatttgcggcagtatggtgtggaaggaggtggcgaggcggataacgatcag
tactcaatggccggcctacgtaaaccagtaatgccactcgacacaggaatgggaccagca
atcggaggacacccaccacactacccaccacgtggaatggcgccaccaaaagatgatcat
gagctgaactcgaagatcaaggatcttgagactgatcagaatgcggcaccgtacgatgaa
cttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTTCGAATCACTTGTGCCGACC 541 417 3073 Antisense
TTACTGTGGTGGATCGTTCGTCTGT 681 671 3108 Antisense
CTGGAAGGGTCCATTCTGTACGTGC 67 241 3141 Antisense
AGCCAACGCGATTCTCGGTGATGAT 144 85 3174 Antisense
ATTAGCTCACCGGCGATTATTCTGA 569 11 3247 Antisense
TTATTCTGATTCTTGTCTCGTTGGC 454 679 3263 Antisense
GTCTCGTTGGCGTTGCTTATACTGT 701 469 3277 Antisense
ATACGAGACGATCGCCTGGTGCATT 93 23 3323 Antisense
GTACTCAATGGCCGGCCTACGTAAA 434 457 3432 Antisense
TACCCACCACGTGGAATGGCGCCAC 137 649 3514 Antisense
AATGCGGCACCGTACGATGAACTTC 224 165 3592 Antisense
Sequence Source Affymetrix Proprietary Database