[Home] | [Total List]

[192791_s_at] C2H2-type zinc finger

Description F13D11.2 /REP_DB=WormBase Gene ID /WP=CE27956 /GEN=hbl-1 /TR=SW:Q9XYD3 /GB=AAA81701.3 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=C2H2-type zinc finger
Cluster 6grp_total > 36      4grp_total > 28      6grp_cgc > 15      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 176.4
(1.7)
P 		160.6
(1.1)
A 		35
(-3)
A 		217.3
(3)
P 		182
B 152.4
(1.5)
M 		143.8
(1.1)
A 		55.3
(-3)
A 		186
(3)
P 		131
C 153.9
(-0.8)
P 		201.1
(1.9)
M 		115.7
(-3)
A 		220.2
(3)
P 		105
avr 160.9
(1) 		168.5
(1.3) 		68.7
(-3) 		207.8
(3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 280
1 2 3 4 5 6 range
A 232.7
(2.9)
P 		223
(2.6)
P 		144.3
(0.2)
A 		100.7
(-1.1)
A 		40.2
(-3)
A 		234.9
(3)
P 		195
B 184.3
(3)
P 		162.7
(1.8)
P 		134.1
(0.2)
A 		103.5
(-1.4)
A 		75
(-3)
A 		141.7
(0.7)
P 		109
C 320.3
(3)
P 		286.9
(2.2)
P 		152.9
(-0.9)
A 		98.6
(-2.2)
A 		64.6
(-3)
A 		168.4
(-0.6)
P 		256
avr 245.8
(3) 		224.2
(2.3) 		143.8
(-0.3) 		100.9
(-1.7) 		59.9
(-3) 		181.7
(0.9) 		186
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 64.2
(3)
P 		34.9
(-0.2)
A 		9.2
(-3)
A 		31.8
(-0.5)
P 		55
B 48.6
(3)
M 		35.5
(0.8)
A 		12.8
(-3)
A 		39.6
(1.5)
P 		36
C 50.9
(1)
P 		57.8
(3)
M 		40.3
(-2.1)
A 		37.1
(-3)
P 		21
avr 54.6
(3) 		42.7
(0.9) 		20.8
(-3) 		36.2
(-0.3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 42.9
(-0.3)
P 		79.3
(3)
P 		31.4
(-1.3)
A 		25.6
(-1.8)
A 		12.1
(-3)
A 		57.2
(1)
P 		67
B 64.1
(3)
P 		54.1
(1.4)
P 		32.6
(-2.1)
A 		27.4
(-3)
A 		30.5
(-2.5)
A 		52.8
(1.2)
P 		37
C 118.7
(3)
P 		87.5
(1.1)
P 		38.9
(-1.8)
A 		19.8
(-3)
A 		20.9
(-2.9)
A 		56.4
(-0.8)
P 		99
avr 75.2
(3) 		73.6
(2.8) 		34.3
(-1.5) 		24.3
(-2.7) 		21.2
(-3) 		55.5
(0.8) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192791_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16110
Sequence Type Exemplar sequence
Representative Public ID F13D11.2 NCBI
Target Description F13D11.2 /REP_DB=WormBase Gene ID /WP=CE27956 /GEN=hbl-1 /TR=SW:Q9XYD3 /GB=AAA81701.3 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=C2H2-type zinc finger
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076575(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076575 NCBI Caenorhabditis elegans HunchBack Like (fly gap gene related) family member (hbl-1) (hbl-1) mRNA, complete cds. 11/11 A 
SNAP00000005817 ENSEMBL cdna:SNAP chromosome:CEL140:X:5822894:5826319:1 11/11 None
F13D11.2 ENSEMBL cdna:known chromosome:CEL140:X:5822109:5827716:1 gene:F13D11.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000005822 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5823089-5826319(+) 100.0 100.0
Public Domain and Genome References
Gene Title C2H2-type zinc finger
Gene Symbol hbl-1
Ensembl F13D11.2
Entrez Gene 180848 Entrez gene
WormBase CE27956 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81701 Hunchback like (fly gap gene related) protein 1 [Caenorhabditis elegans] ref|NP_508976.1| HunchBack Like (fly gap gene related) family member (hbl-1) [Caenorhabditis elegans] gb|AAD16170.1| hunchback-related protein [Caenorhabditis elegans] sp|Q9XYD3|HBL1_CAEEL Hunchback-like protein 0.0
blast T16057 hypothetical protein F13D11.2 - Caenorhabditis elegans 0.0
blast CAE68806 Hypothetical protein CBG14758 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:192791_S_AT
accttccaagtttctctcatgtggcaccagataatgacaatgcactcgaatccatggatt
gcgatgtgaagattgacgatgacaacatcactgaaagtcattgctatgaagaaatggacc
agggtagtgactcggctgtttcaccaactggcagttcacaaatttcatccggagacgagg
agacgaaaaagtgcaaatcgttgtcgttagagcaaataagcgcaagggctaatggaaaca
acagcccgatgagcaacgacagtgcaatggagaaagatggcgagagcgctgatgacgcac
cacattcaccatcggatacaacatcagttccatctccacctcttcattcgtcttcaatcg
tcgcgccaatccctattactccacagccgaatgagtttttgcagtccattcttgcacaag
cttccctactcggccccctacttgcaaaccgacctagtgcattttactgtgatcattgca
aaattccatttgatacccagcaagtattggacagtcatatgagattccacacaccaggga
acccgttcatgtgcagtgactgtcagtatcaggctttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCTTCCAAGTTTCTCTCATGTGGC 388 87 2270 Antisense
GACAATGCACTCGAATCCATGGATT 311 365 2305 Antisense
GGACCAGGGTAGTGACTCGGCTGTT 393 521 2385 Antisense
AACAGCCCGATGAGCAACGACAGTG 707 133 2509 Antisense
GGATACAACATCAGTTCCATCTCCA 457 511 2583 Antisense
CCCTATTACTCCACAGCCGAATGAG 513 257 2640 Antisense
TGCAGTCCATTCTTGCACAAGCTTC 214 579 2669 Antisense
CCCTACTTGCAAACCGACCTAGTGC 596 255 2705 Antisense
AGTCATATGAGATTCCACACACCAG 532 61 2782 Antisense
GAACCCGTTCATGTGCAGTGACTGT 480 343 2808 Antisense
GTGACTGTCAGTATCAGGCTTTCAA 204 483 2825 Antisense
Sequence Source Affymetrix Proprietary Database