[Home] | [Total List]

[192789_at]

Description F26B1.5 /REP_DB=WormBase Gene ID /WP=CE28005 /TR=P91273 /GB=AAB37787.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster 6grp_total > 79      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 8.5
(-3)
A 		38
(3)
A 		35.7
(2.5)
A 		9.8
(-2.7)
A 		30
B 5.2
(-3)
A 		41.8
(2)
A 		33.7
(0.9)
A 		49.1
(3)
A 		44
C 40.1
(1.2)
A 		10.2
(-3)
A 		46.3
(2.1)
A 		52.6
(3)
A 		42
avr 17.9
(-3) 		30
(0.5) 		38.6
(3) 		37.2
(2.6) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 61.1
(1.8)
A 		8
(-2.6)
A 		20.3
(-1.6)
A 		3.4
(-3)
A 		75
(3)
A 		50.4
(0.9)
A 		72
B 4
(-3)
A 		41.7
(0.4)
A 		35
(-0.2)
A 		24.2
(-1.2)
A 		38.7
(0.1)
A 		71.4
(3)
A 		67
C 5.2
(-3)
A 		68.8
(2)
A 		26.8
(-1.3)
A 		9.1
(-2.7)
A 		31.5
(-0.9)
A 		81.8
(3)
A 		77
avr 23.4
(-1.8) 		39.5
(-0.1) 		27.4
(-1.4) 		12.2
(-3) 		48.4
(0.9) 		67.9
(3) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 3.1
(-1.7)
A 		8.2
(2.2)
A 		9.3
(3)
A 		1.4
(-3)
A 		8
B 1.7
(-3)
A 		10.3
(2.9)
A 		7.8
(1.2)
A 		10.5
(3)
A 		9
C 13.3
(1.7)
A 		2.9
(-3)
A 		16.1
(3)
A 		8.9
(-0.3)
A 		13
avr 6
(-3) 		7.1
(-1.7) 		11.1
(3) 		6.9
(-1.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 11.3
(-0.1)
A 		2.9
(-2.4)
A 		4.4
(-2)
A 		0.9
(-3)
A 		22.6
(3)
A 		12.3
(0.2)
A 		22
B 1.4
(-3)
A 		13.9
(-0)
A 		8.5
(-1.3)
A 		6.4
(-1.8)
A 		15.7
(0.4)
A 		26.6
(3)
A 		25
C 1.9
(-3)
A 		21
(1.5)
A 		6.8
(-1.8)
A 		1.8
(-3)
A 		10.2
(-1)
A 		27.4
(3)
A 		26
avr 4.9
(-2.4) 		12.6
(0) 		6.6
(-1.9) 		3
(-3) 		16.2
(1.1) 		22.1
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192789_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.831
Sequence Type Exemplar sequence
Representative Public ID F26B1.5 NCBI
Target Description F26B1.5 /REP_DB=WormBase Gene ID /WP=CE28005 /TR=P91273 /GB=AAB37787.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059420(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059420 NCBI Caenorhabditis elegans F26B1.5a (F26B1.5) mRNA, complete cds. 11/11 None
SNAP00000041712 ENSEMBL cdna:SNAP chromosome:CEL140:I:6316324:6318916:1 11/11 None
GENEFINDER00000041723 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6317249:6322727:1 11/11 None
F26B1.5a ENSEMBL cdna:known chromosome:CEL140:I:6317249:6318916:1 gene:F26B1.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182069 2/11 Cross Hyb Matching Probes None
F26B1.5b 2/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172328 2 1 NM_059420 192789_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6316318-6318845(+) 100.0 100.0
Public Domain and Genome References
Ensembl F26B1.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491821 F26B1.5a [Caenorhabditis elegans] gb|AAB37787.2| Hypothetical protein F26B1.5a [Caenorhabditis elegans] 0.0
blast NP_491821 F26B1.5a [Caenorhabditis elegans] gb|AAB37787.2| Hypothetical protein F26B1.5a [Caenorhabditis elegans] 1.0E-155
blast CAA94346 Hypothetical protein F49E11.7 [Caenorhabditis elegans] ref|NP_502500.1| F49E11.7 [Caenorhabditis elegans] 1.0E-126
blast CAA94346 Hypothetical protein F49E11.7 [Caenorhabditis elegans] ref|NP_502500.1| F49E11.7 [Caenorhabditis elegans] 1.0E-124
blast NP_871869 F26B1.5b [Caenorhabditis elegans] gb|AAO12450.1| Hypothetical protein F26B1.5b [Caenorhabditis elegans] 1.0E-123
blast AAB92072 Hypothetical protein F42G8.8 [Caenorhabditis elegans] ref|NP_501356.1| F42G8.8 [Caenorhabditis elegans] 1.0E-121
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.9E-33
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 4.0E-16
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 5.1E-37
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 3.6E-19
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 9.1E-50
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 1.5E-13
Pfam IPR008160 EMBL-EBI Collagen triple helix repeat 6.2E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000041723 5 749-768,796-815,841-863,875-897,910-932
Sequence
Target Sequence 
>C. ELEGANS:192789_AT
aagtgttctcttttatgccattggcttgtttagttggtggacgaatcttgtgcatgcacg
gaggaattagtgaaaaattggagtcattggattctattgatagcatcgtacgcccacttc
cggaagttaccgatttggctcaagatttattgtggtctgatccaatggatgtacaaacct
tggcatcgatcagtgatacaccaaagtatgccaagaacattgtccgtggattagcacatt
ccttcaatgatgcagcagtacgagatgtttgccgacgtctaaatcttcatttagttgttc
gagcccatcagatgattcccgaaggattcaaattcaactcggaccgcaagcttctcacta
ttttctcggcgccacgttacatgaatgagagtgataaccgtggtgccacgttgcaagtcg
acgtaaatggacaattgagtattagtgtaatgagatacacaaaaccacttcgtacaaaag
ctttgggttcagatgaaatcactcgtggagaccatctgcctgatatttcaagaaagaaat
caaactcttttattccttctacattttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGTTCTCTTTTATGCCATTGGC 45 159 803 Antisense
GTTGGTGGACGAATCTTGTGCATGC 698 435 835 Antisense
TACAAACCTTGGCATCGATCAGTGA 372 639 974 Antisense
GTCCGTGGATTAGCACATTCCTTCA 261 477 1024 Antisense
GATGTTTGCCGACGTCTAAATCTTC 539 409 1066 Antisense
TAGTTGTTCGAGCCCATCAGATGAT 376 653 1094 Antisense
TTCAACTCGGACCGCAAGCTTCTCA 332 685 1135 Antisense
TCTCGGCGCCACGTTACATGAATGA 609 611 1166 Antisense
TGGTGCCACGTTGCAAGTCGACGTA 38 553 1203 Antisense
GGAGACCATCTGCCTGATATTTCAA 352 519 1309 Antisense
CTCTTTTATTCCTTCTACATTTTCA 301 229 1347 Antisense
Sequence Source Affymetrix Proprietary Database