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[192780_at] Ras association (RalGDS/AF-6) domain

Description W05B10.4 /REP_DB=WormBase Gene ID /WP=CE14608 /TR=P91575 /GB=CAA98966.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Ras association (RalGDS-AF-6) domain
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 44      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 85      6grp_total > 46      4grp_total > 21      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 313
1 2 3 4 range
A 702.9
(2.3)
P 		483.5
(-3)
P 		518.4
(-2.2)
P 		733.3
(3)
P 		250
B 637.1
(-1)
P 		669.4
(-0.2)
P 		556.2
(-3)
P 		796.4
(3)
P 		240
C 709.8
(2.2)
P 		647.4
(-0.6)
P 		595.3
(-3)
P 		727
(3)
P 		132
avr 683.3
(0.9) 		600.1
(-1.7) 		556.6
(-3) 		752.2
(3) 		196

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 476
1 2 3 4 5 6 range
A 629.9
(-2.1)
P 		819
(1.4)
P 		904.1
(3)
P 		801.1
(1.1)
P 		582.2
(-3)
P 		857.4
(2.1)
P 		322
B 810.4
(-0.4)
P 		1052.2
(3)
P 		827.3
(-0.1)
P 		620.5
(-3)
P 		659.7
(-2.5)
P 		917.5
(1.1)
P 		432
C 650.6
(-2.2)
P 		1058.1
(3)
P 		700.9
(-1.5)
P 		642.6
(-2.3)
P 		584.6
(-3)
P 		939.5
(1.5)
P 		474
avr 697
(-1.6) 		976.4
(3) 		810.8
(0.3) 		688.1
(-1.7) 		608.8
(-3) 		904.8
(1.8) 		368
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 255.9
(3)
P 		104.9
(-3)
P 		135.5
(-1.8)
P 		107.3
(-2.9)
P 		151
B 203.2
(3)
P 		165.3
(-0.1)
P 		128.9
(-3)
P 		169.7
(0.3)
P 		74
C 235
(3)
P 		186.1
(0.4)
P 		207.5
(1.5)
P 		122.6
(-3)
P 		112
avr 231.4
(3) 		152.1
(-1.8) 		157.3
(-1.5) 		133.2
(-3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 234
1 2 3 4 5 6 range
A 116.1
(-3)
P 		291.3
(3)
P 		196.9
(-0.2)
P 		203.2
(-0)
P 		175.7
(-1)
P 		208.8
(0.2)
P 		175
B 282
(0.8)
P 		350.2
(3)
P 		200.9
(-1.8)
P 		164.4
(-3)
P 		268
(0.3)
P 		342.1
(2.7)
P 		186
C 241.1
(0.5)
P 		322.8
(3)
P 		178.4
(-1.5)
P 		129.2
(-3)
P 		189.2
(-1.1)
P 		314.5
(2.7)
P 		194
avr 213.1
(-1.2) 		321.4
(3) 		192.1
(-2) 		165.6
(-3) 		211
(-1.3) 		288.5
(1.7) 		156
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192780_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14495
Sequence Type Exemplar sequence
Representative Public ID W05B10.4 NCBI
Target Description W05B10.4 /REP_DB=WormBase Gene ID /WP=CE14608 /TR=P91575 /GB=CAA98966.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Ras association (RalGDS-AF-6) domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073765(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073765 NCBI Caenorhabditis elegans W05B10.4 (W05B10.4) mRNA, complete cds. 11/11 None
SNAP00000011552 ENSEMBL cdna:SNAP chromosome:CEL140:V:12670821:12672193:1 11/11 None
GENEFINDER00000011557 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12670821:12672193:1 11/11 None
W05B10.4 ENSEMBL cdna:known chromosome:CEL140:V:12670815:12672193:1 gene:W05B10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12670820-12672193(+) 100.0 100.0
Public Domain and Genome References
Gene Title Ras association (RalGDS/AF-6) domain
Ensembl W05B10.4
Entrez Gene 179736 Entrez gene
SwissProt P91575 EMBL-EBI
WormBase CE14608 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1626233_AT dm
DROSGENOME1:151809_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98966 Hypothetical protein W05B10.4 [Caenorhabditis elegans] ref|NP_506166.1| W05B10.4 [Caenorhabditis elegans] 1.0E-115
blast CAE63962 Hypothetical protein CBG08550 [Caenorhabditis briggsae] 1.0E-104
blast EAA10164 ENSANGP00000011090 [Anopheles gambiae str. PEST] ref|XP_314810.2| ENSANGP00000011090 [Anopheles gambiae str. PEST] 6.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR000159 EMBL-EBI RA domain 2.8E-20
Sequence
Target Sequence 
>C. ELEGANS:192780_AT
gaagcaattcacttctttcccttaactcaactgatagtaatatttcggattcttcagatg
tgggagtcctaaaagttgatacgcggagtgttaaacaatgtaccgattacaagacaatcc
gagttactaattcaacaacagcacgccaagtcgttgaaaaatttctgacaactctcaagc
tcacttgccgagatataaacatgttcgaactttggatggagctcacaacaagagcttcgg
gagctcctgttgtcacacttctaaaactggatcctgaatctcgaccatatgaacttcaaa
gatgccatccaatcggaatgtctcgtttcatacttcttcaaagtccaacaggatatctcg
tcagagttcatgatcataatatttctcctcaatctaactacaagtcattgctcctttcat
ctcaaacaacagttcttgaagctattcatattgttctcggcttaaatcgaaaatatgatg
atatctcaaagtatggactattcttagcaacacctggagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCAATTCACTTCTTTCCCTTAA 460 341 164 Antisense
AACTCTCAAGCTCACTTGCCGAGAT 358 141 333 Antisense
GCTCCTGTTGTCACACTTCTAAAAC 143 299 406 Antisense
GGATCCTGAATCTCGACCATATGAA 509 513 432 Antisense
GATGCCATCCAATCGGAATGTCTCG 461 415 464 Antisense
GAATGTCTCGTTTCATACTTCTTCA 171 331 479 Antisense
AGTCCAACAGGATATCTCGTCAGAG 153 61 505 Antisense
ATATTTCTCCTCAATCTAACTACAA 391 19 542 Antisense
ACTACAAGTCATTGCTCCTTTCATC 436 101 560 Antisense
GCTATTCATATTGTTCTCGGCTTAA 674 303 604 Antisense
GACTATTCTTAGCAACACCTGGAGG 698 369 659 Antisense
Sequence Source Affymetrix Proprietary Database