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[192773_at] Zinc finger, C3HC4 type (RING finger)

Description C36B1.9 /REP_DB=WormBase Gene ID /WP=CE05376 /TR=Q93343 /GB=CAB02274.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_high1_10_10 > 41      6grp_total > 31      4grp_total > 23      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 247.6
(3)
P 		145.9
(-3)
A 		147.1
(-2.9)
M 		242.1
(2.7)
P 		102
B 272.6
(3)
P 		158.2
(-2.4)
A 		144.5
(-3)
A 		215.3
(0.3)
P 		128
C 197.1
(3)
P 		153.2
(-1.1)
A 		133.5
(-3)
P 		170.2
(0.5)
P 		64
avr 239.1
(3) 		152.4
(-2.3) 		141.7
(-3) 		209.2
(1.2) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 132.2
(-3)
P 		142.9
(-1.5)
P 		176.3
(3)
P 		162.1
(1.1)
P 		149
(-0.7)
P 		143.4
(-1.5)
P 		44
B 169.3
(0.9)
P 		164
(0.6)
P 		210.2
(3)
P 		156.3
(0.2)
P 		95.5
(-3)
A 		98.5
(-2.8)
P 		115
C 138.1
(0.7)
P 		188.7
(3)
P 		178.9
(2.6)
P 		92.3
(-1.4)
A 		57.2
(-3)
A 		122.8
(-0)
P 		132
avr 146.5
(0.1) 		165.2
(1.4) 		188.5
(3) 		136.9
(-0.5) 		100.6
(-3) 		121.6
(-1.6) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 90.1
(3)
P 		31.7
(-3)
A 		38.5
(-2.3)
M 		35.4
(-2.6)
P 		58
B 86.9
(3)
P 		39.1
(-2.4)
A 		33.5
(-3)
A 		45.9
(-1.6)
P 		53
C 65.2
(3)
P 		44
(-0.5)
A 		46.5
(-0.1)
P 		28.7
(-3)
P 		37
avr 80.7
(3) 		38.3
(-2.8) 		39.5
(-2.6) 		36.7
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 24.4
(-3)
P 		50.8
(3)
P 		38.4
(0.2)
P 		41.1
(0.8)
P 		45
(1.7)
P 		34.9
(-0.6)
P 		26
B 58.9
(3)
P 		54.6
(1.8)
P 		51
(0.9)
P 		41.4
(-1.7)
P 		38.8
(-2.4)
A 		36.7
(-3)
P 		22
C 51.2
(2)
P 		57.6
(3)
P 		45.5
(1.1)
P 		18.6
(-3)
A 		18.5
(-3)
A 		41.1
(0.5)
P 		39
avr 44.8
(0.2) 		54.3
(3) 		45
(0.3) 		33.7
(-3) 		34.1
(-2.9) 		37.6
(-1.9) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192773_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2475
Sequence Type Exemplar sequence
Representative Public ID C36B1.9 NCBI
Target Description C36B1.9 /REP_DB=WormBase Gene ID /WP=CE05376 /TR=Q93343 /GB=CAB02274.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059965(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059965 NCBI Caenorhabditis elegans C36B1.9 (C36B1.9) mRNA, complete cds. 11/11 None
GENEFINDER00000022517 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8751424:8755050:-1 11/11 None
SNAP00000022505 ENSEMBL cdna:SNAP chromosome:CEL140:I:8751974:8755050:-1 11/11 None
C36B1.9 ENSEMBL cdna:known chromosome:CEL140:I:8751974:8755050:-1 gene:C36B1.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8751904-8754981(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Ensembl C36B1.9
Entrez Gene 183252 Entrez gene
SwissProt Q93343 EMBL-EBI
WormBase CE05376 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15992 proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02274 Hypothetical protein C36B1.9 [Caenorhabditis elegans] ref|NP_492366.1| C36B1.9 [Caenorhabditis elegans] 0.0
blast CAE66964 Hypothetical protein CBG12358 [Caenorhabditis briggsae] 1.0E-157
blast CAE66964 Hypothetical protein CBG12358 [Caenorhabditis briggsae] 1.0E-156
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 5.2E-9
Sequence
Target Sequence 
>C. ELEGANS:192773_AT
tagacacggacctgatagcttctcacttccacataatcatgcaaatctgaactctcttta
tcgagaacttttacctccaaatagcccaataacaattactgatacgatgtctgattctca
acttgctgatctccgtcgttattctcaagcaaataatgttgattgtgaccgacttcttcg
agttcttcgtcatcacagtattaaatttgcacctacaatcgttgaatctccacgtctaac
cgaaagacgtcgtcgtcgtcaacgtccagttccagccgatgattataatgctcatctgtc
agttatcagaaaaagagcaaaagaagcactacgtggcaatcgaccagagcaaccaacaaa
tggagaagaatcaaacttgacgattcgattaattgtaaatttggcgaattcaatgggagt
aagagagaagcttgatgacgtcatttgtccacaacatagagctcaagaagaggaaaaaga
aatgtttgttccacgaacaaatggctcaactcgacaagaaatgctcttttgtaatgtatg
ccgatgtgaagttccaatgggatccaaagcagttcattctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGACACGGACCTGATAGCTTCTCA 8 651 1413 Antisense
GCTTCTCACTTCCACATAATCATGC 680 305 1430 Antisense
GTCTGATTCTCAACTTGCTGATCTC 620 471 1521 Antisense
ATCTCCGTCGTTATTCTCAAGCAAA 549 33 1541 Antisense
GATTGTGACCGACTTCTTCGAGTTC 565 433 1573 Antisense
AGTTCTTCGTCATCACAGTATTAAA 439 63 1593 Antisense
TTGCACCTACAATCGTTGAATCTCC 386 697 1619 Antisense
TTGAATCTCCACGTCTAACCGAAAG 702 703 1634 Antisense
GAAAGACGTCGTCGTCGTCAACGTC 37 359 1654 Antisense
GAAGCACTACGTGGCAATCGACCAG 373 341 1735 Antisense
GGGATCCAAAGCAGTTCATTCTCAA 267 495 1971 Antisense
Sequence Source Affymetrix Proprietary Database