[Home] | [Total List]

[192772_at] Yeast recessive suppressor RSD1 like

Description F30A10.6 /REP_DB=WormBase Gene ID /WP=CE09807 /TR=Q93641 /GB=CAB03020.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Yeast recessive suppressor RSD1 like
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 75      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 65      6grp_total > 75      4grp_total > 63      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 488
1 2 3 4 range
A 1367.6
(3)
P 		1044.7
(-2.5)
P 		1282.3
(1.5)
P 		1016.1
(-3)
P 		352
B 1361.6
(3)
P 		1064.1
(-1.7)
P 		1163.6
(-0.1)
P 		981.4
(-3)
P 		380
C 1266.1
(3)
P 		985.1
(-1.4)
P 		1230.1
(2.4)
P 		879.8
(-3)
P 		386
avr 1331.8
(3) 		1031.3
(-1.8) 		1225.3
(1.3) 		959.1
(-3) 		373

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 529
1 2 3 4 5 6 range
A 1093.6
(-3)
P 		1228.9
(-0.8)
P 		1449.5
(2.9)
P 		1457.1
(3)
P 		1154.5
(-2)
P 		1445.5
(2.8)
P 		364
B 1183.2
(-0.8)
P 		1366
(1.2)
P 		992.1
(-3)
P 		1411.9
(1.8)
P 		1244.5
(-0.1)
P 		1521.4
(3)
P 		529
C 1011.8
(-3)
P 		1281.5
(2.5)
P 		1305.4
(3)
P 		1243.6
(1.7)
P 		1037.5
(-2.5)
P 		1225.7
(1.4)
P 		294
avr 1096.2
(-3) 		1292.1
(0.9) 		1249
(0) 		1370.9
(2.5) 		1145.5
(-2) 		1397.5
(3) 		301
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 350
1 2 3 4 range
A 497.9
(3)
P 		226.8
(-1.7)
P 		335.2
(0.2)
P 		148.7
(-3)
P 		349
B 434.2
(3)
P 		262.8
(-1.6)
P 		269.6
(-1.4)
P 		209.1
(-3)
P 		225
C 419.1
(2.8)
P 		283.2
(-0.1)
P 		428.7
(3)
P 		148.3
(-3)
P 		280
avr 450.4
(3) 		257.6
(-1.1) 		344.5
(0.7) 		168.7
(-3) 		282

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 366
1 2 3 4 5 6 range
A 201.6
(-3)
P 		437.1
(3)
P 		315.7
(-0.1)
P 		369.5
(1.3)
P 		348.4
(0.7)
P 		351.9
(0.8)
P 		236
B 411.7
(0.1)
P 		454.7
(0.9)
P 		240.9
(-3)
P 		374
(-0.6)
P 		505.6
(1.9)
P 		567.3
(3)
P 		326
C 375
(1.7)
P 		391
(2.3)
P 		332.3
(0.1)
P 		250.1
(-3)
P 		335.7
(0.2)
P 		410.3
(3)
P 		160
avr 329.4
(-1.6) 		427.6
(2.4) 		296.3
(-3) 		331.2
(-1.6) 		396.6
(1.1) 		443.2
(3) 		147
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192772_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1509
Sequence Type Exemplar sequence
Representative Public ID F30A10.6 NCBI
Target Description F30A10.6 /REP_DB=WormBase Gene ID /WP=CE09807 /TR=Q93641 /GB=CAB03020.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Yeast recessive suppressor RSD1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060117(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060117 NCBI Caenorhabditis elegans F30A10.6 (F30A10.6) mRNA, complete cds. 11/11 None
SNAP00000021992 ENSEMBL cdna:SNAP chromosome:CEL140:I:9496620:9500621:1 11/11 None
GENEFINDER00000022006 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9496620:9500621:1 11/11 None
F30A10.6 ENSEMBL cdna:known chromosome:CEL140:I:9496611:9500711:1 gene:F30A10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9496571-9500552(+) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast recessive suppressor RSD1 like
Ensembl F30A10.6
Entrez Gene 172778 Entrez gene
SwissProt Q93641 EMBL-EBI
WormBase CE09807 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:252104_AT phosphoinositide phosphatase family protein at
CANINE_2:CFAAFFX.21617.1.S1_AT similar to suppressor of actin 1 cfa
DROSOPHILA_2:1640190_AT dm
DROSGENOME1:152174_AT dm
CHICKEN:GGA.8157.1.S1_AT similar to KIAA0851 protein gga
CHICKEN:GGAAFFX.7526.1.S1_AT similar to KIAA0851 protein gga
HU35KSUBA:N27587_S_AT SAC1 suppressor of actin mutations 1-like (yeast) hs
HU35KSUBB:RC_R40685_AT SAC1 suppressor of actin mutations 1-like (yeast) hs
HG-U133A:202797_AT SAC1 suppressor of actin mutations 1-like (yeast) hs
HG-U133_PLUS_2:202797_AT SAC1 suppressor of actin mutations 1-like (yeast) hs
HG-U133A_2:202797_AT SAC1 suppressor of actin mutations 1-like (yeast) hs
U133_X3P:G7662337_3P_AT SAC1 suppressor of actin mutations 1-like (yeast) hs
HG-U95AV2:36511_AT SAC1 suppressor of actin mutations 1-like (yeast) hs
HG-U95B:48212_AT SAC1 suppressor of actin mutations 1-like (yeast) hs
HG-U95D:83475_R_AT SAC1 suppressor of actin mutations 1-like (yeast) hs
HU35KSUBC:RC_AA280385_AT SAC1 suppressor of actin mutations 1-like (yeast) hs
MU11KSUBA:AA185984_S_AT SAC1 (supressor of actin mutations 1, homolog)-like (S. cerevisiae) mm
MG-U74BV2:107877_AT SAC1 (supressor of actin mutations 1, homolog)-like (S. cerevisiae) mm
MG-U74AV2:160930_AT SAC1 (supressor of actin mutations 1, homolog)-like (S. cerevisiae) mm
MOE430A:1416500_AT SAC1 (supressor of actin mutations 1, homolog)-like (S. cerevisiae) mm
MOUSE430A_2:1416500_AT SAC1 (supressor of actin mutations 1, homolog)-like (S. cerevisiae) mm
MOUSE430_2:1416500_AT SAC1 (supressor of actin mutations 1, homolog)-like (S. cerevisiae) mm
MOE430B:1438900_AT SAC1 (supressor of actin mutations 1, homolog)-like (S. cerevisiae), mRNA (cDNA clone IMAGE:3486559) mm
MOUSE430_2:1438900_AT SAC1 (supressor of actin mutations 1, homolog)-like (S. cerevisiae), mRNA (cDNA clone IMAGE:3486559) mm
MU19KSUBA:TC17367_AT SAC1 (supressor of actin mutations 1, homolog)-like (S. cerevisiae), mRNA (cDNA clone IMAGE:3486559) mm
RG-U34C:RC_AI177608_AT SAC1 (supressor of actin mutations 1, homolog)-like (S. cerevisiae) rn
RAE230A:1368433_AT SAC1 (supressor of actin mutations 1, homolog)-like (S. cerevisiae) rn
RAT230_2:1368433_AT SAC1 (supressor of actin mutations 1, homolog)-like (S. cerevisiae) rn
YEAST_2:1773279_AT Lipid phosphoinositide phosphatase of the ER and Golgi, involved in protein trafficking and secretion Sc
Protein Similarities
Method ID Description E-Value
blast CAB03020 Hypothetical protein F30A10.6 [Caenorhabditis elegans] ref|NP_492518.1| F30A10.6 [Caenorhabditis elegans] 0.0
blast CAE56712 Hypothetical protein CBG24498 [Caenorhabditis briggsae] 0.0
blast AAH77608 MGC84016 protein [Xenopus laevis] gb|AAH74260.1| MGC84016 protein [Xenopus laevis] 1.0E-140
Protein Domains
Database ID Description E-Value
Pfam IPR002013 EMBL-EBI Synaptojanin, N-terminal 1.0E-126
Pfam IPR002013 EMBL-EBI Synaptojanin, N-terminal 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492518.1 2 536-555,560-577
F30A10.6 2 536-555,560-577
SNAP00000021992 2 543-562,567-584
GENEFINDER00000022006 2 543-562,567-584
Sequence
Target Sequence 
>C. ELEGANS:192772_AT
gtggatttttccgtacgaattgcatggattgtctagatcgtaccaatgtggttcagtcga
tgttggcacgtgaatcactcaccgaacaacttcgaatgcttggaattttatattcagagc
agaaagttcaagatattccacttcttgaagatgcattcaaacaaatgtgggcagataatg
gtgatgaatgtagtcgtcaatatgctggaacaggcgcattgaaagcagatttcactcgtc
acggaagacggacatatgttggagcaatgaaagacggtgtcaatgcagtgtcccgttacg
tacgaaataattttggagatggataccgtcaagattcaattgatctcttccttggtaact
tcctagtcgattcgtcagatcttcctgtttcgctggaatcttcgattctatcaacggatc
agaatggtcttgcccttattgccgcgttgtttgccatgtcaatgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGATTTTTCCGTACGAATTGCAT 405 485 1190 Antisense
GTGGTTCAGTCGATGTTGGCACGTG 294 489 1237 Antisense
TTGGCACGTGAATCACTCACCGAAC 100 709 1252 Antisense
GCAGATTTCACTCGTCACGGAAGAC 60 313 1414 Antisense
ATGCAGTGTCCCGTTACGTACGAAA 488 43 1472 Antisense
TGATCTCTTCCTTGGTAACTTCCTA 33 565 1530 Antisense
CTAGTCGATTCGTCAGATCTTCCTG 299 225 1552 Antisense
GATCTTCCTGTTTCGCTGGAATCTT 63 421 1567 Antisense
GAATCTTCGATTCTATCAACGGATC 605 327 1585 Antisense
GGATCAGAATGGTCTTGCCCTTATT 59 511 1605 Antisense
CCGCGTTGTTTGCCATGTCAATGAC 569 261 1631 Antisense
Sequence Source Affymetrix Proprietary Database