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[192770_at] calgranulin C calcium binding domains

Description ZK938.3 /REP_DB=WormBase Gene ID /WP=CE02398 /TR=Q23673 /GB=CAA90143.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=calgranulin C calcium binding domains
Cluster 6grp_total > 02      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 76.8
(3)
M 		61.7
(-3)
A 		73.7
(1.8)
A 		74.6
(2.1)
M 		15
B 43.5
(-3)
P 		83.6
(3)
P 		43.6
(-3)
A 		81.6
(2.7)
P 		40
C 76.1
(0.7)
P 		78.5
(1)
P 		43.4
(-3)
A 		96.4
(3)
P 		53
avr 65.5
(-0.7) 		74.6
(1.1) 		53.6
(-3) 		84.2
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 62.5
(3)
P 		56.9
(2.2)
P 		27.7
(-2.1)
A 		57.3
(2.2)
A 		48.7
(1)
A 		21.9
(-3)
A 		41
B 44
(-0.3)
P 		55
(1.6)
P 		55.2
(1.6)
A 		28.7
(-3)
A 		63.2
(3)
P 		40.5
(-0.9)
A 		35
C 56.6
(-0.8)
P 		103
(3)
P 		66.7
(0.1)
P 		29
(-3)
A 		53.9
(-1)
P 		28.8
(-3)
A 		74
avr 54.4
(0.5) 		71.6
(3) 		49.9
(-0.2) 		38.3
(-1.8) 		55.3
(0.6) 		30.4
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 28
(3)
M 		13.4
(-2.1)
A 		19.3
(-0.1)
A 		10.9
(-3)
M 		17
B 13.9
(-0.8)
P 		20.6
(3)
P 		10.1
(-3)
A 		17.4
(1.2)
P 		11
C 25.2
(3)
P 		22.6
(1.5)
P 		15.1
(-3)
A 		16.3
(-2.3)
P 		10
avr 22.4
(3) 		18.9
(0.2) 		14.8
(-3) 		14.9
(-2.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 11.5
(-0.5)
P 		20.2
(3)
P 		6
(-2.7)
A 		14.5
(0.7)
A 		14.7
(0.8)
A 		5.3
(-3)
A 		15
B 15.3
(-0.4)
P 		18.3
(0.5)
P 		13.4
(-1.1)
A 		7.6
(-3)
A 		25.7
(3)
P 		15.1
(-0.5)
A 		18
C 21
(0.6)
P 		31.4
(3)
P 		17
(-0.4)
P 		5.8
(-3)
A 		17.4
(-0.3)
P 		9.6
(-2.1)
A 		26
avr 15.9
(-0.2) 		23.3
(3) 		12.1
(-1.8) 		9.3
(-3) 		19.3
(1.3) 		10
(-2.7) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192770_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3510
Sequence Type Exemplar sequence
Representative Public ID ZK938.3 NCBI
Target Description ZK938.3 /REP_DB=WormBase Gene ID /WP=CE02398 /TR=Q23673 /GB=CAA90143.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=calgranulin C calcium binding domains
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063717(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063717 NCBI Caenorhabditis elegans ZK938.3 (ZK938.3) mRNA, complete cds. 11/11 None
SNAP00000044674 ENSEMBL cdna:SNAP chromosome:CEL140:II:9831559:9833815:-1 11/11 None
GENEFINDER00000044686 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9831559:9833815:-1 11/11 None
ZK938.3 ENSEMBL cdna:known chromosome:CEL140:II:9831559:9834275:-1 gene:ZK938.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9831555-9834272(-) 100.0 100.0
Public Domain and Genome References
Gene Title calgranulin C calcium binding domains
Ensembl ZK938.3
Entrez Gene 191468 Entrez gene
SwissProt Q23673 EMBL-EBI
WormBase CE02398 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90143 Hypothetical protein ZK938.3 [Caenorhabditis elegans] ref|NP_496118.1| ZK938.3 [Caenorhabditis elegans] 0.0
blast CAE57963 Hypothetical protein CBG01024 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000048 EMBL-EBI IQ calmodulin-binding region 1.9E-5
Pfam IPR000048 EMBL-EBI IQ calmodulin-binding region 1.9E-5
Sequence
Target Sequence 
>C. ELEGANS:192770_AT
tgtactccatgttcacttggcacgtggcaaaaacaaaagtcgaaagatcagaaaatgcag
tggctattgctgtcaggagctccagactcggggaagactacgtgggcgagagcaatatcg
cgtgcatgtcatgtcacacacgttcacatttcgaaaaatgtcgtgaatatgggaaaacgc
aaaatttatacggtggttaaaaagctggcaaaacaggaaaaacgactattggtcagtatt
gatcgaattgacgtgatgaagaaggatcccaagcataaagggtacacacatcgacagata
cttctccgaaacttcctatccgatctttcgaatataaaatttgttatggtaattgggatg
acaagagttcccctggacgacttggatagttatatttctgatttattccctctccaagca
actctcagtaacccaaccaacgcaactagatacgatcttgcggtagattgcttaagtcgg
aactgggaacaagaacggctgccaaagtttccaaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTACTCCATGTTCACTTGGCACGT 1 561 1372 Antisense
GTGGCTATTGCTGTCAGGAGCTCCA 682 491 1431 Antisense
GGAGCTCCAGACTCGGGGAAGACTA 608 519 1447 Antisense
ATCGCGTGCATGTCATGTCACACAC 320 37 1488 Antisense
TGTCACACACGTTCACATTTCGAAA 498 559 1503 Antisense
GACAGATACTTCTCCGAAACTTCCT 627 365 1664 Antisense
AAACTTCCTATCCGATCTTTCGAAT 35 129 1680 Antisense
AGTTCCCCTGGACGACTTGGATAGT 560 15 1737 Antisense
TATATTTCTGATTTATTCCCTCTCC 587 661 1762 Antisense
TAACCCAACCAACGCAACTAGATAC 140 639 1800 Antisense
GAACGGCTGCCAAAGTTTCCAAATC 545 347 1864 Antisense
Sequence Source Affymetrix Proprietary Database