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[192769_at] ubiquitin carboxyl-terminal hydrolase

Description F02E9.3 /REP_DB=WormBase Gene ID /WP=CE09186 /TR=O01317 /GB=CAB04050.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ubiquitin carboxyl-terminal hydrolase
Cluster 6grp_total > 99      4grp_total > 35      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 52.1
(0.4)
A 		66
(3)
A 		33.9
(-3)
A 		37.4
(-2.3)
A 		32
B 68.4
(-3)
A 		78.5
(-1.6)
A 		68.6
(-3)
A 		110.3
(3)
A 		42
C 55.3
(-3)
A 		94.2
(3)
A 		59.3
(-2.4)
A 		63.1
(-1.8)
A 		39
avr 58.6
(-1.9) 		79.6
(3) 		53.9
(-3) 		70.3
(0.8) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 80.9
(1.9)
A 		43
(-2.1)
A 		34.6
(-3)
A 		41.4
(-2.3)
A 		91.2
(3)
A 		64.3
(0.1)
A 		57
B 38.6
(-1.8)
A 		47.7
(-0.9)
A 		35.6
(-2.1)
A 		27.2
(-3)
A 		86.2
(3)
A 		69.4
(1.3)
A 		59
C 31.2
(-3)
A 		66.9
(1.4)
A 		73.5
(2.2)
A 		46.8
(-1.1)
A 		42.9
(-1.6)
A 		79.8
(3)
P 		49
avr 50.2
(-1) 		52.5
(-0.6) 		47.9
(-1.4) 		38.5
(-3) 		73.4
(3) 		71.2
(2.6) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 19
(3)
A 		14.3
(0.9)
A 		8.9
(-1.5)
A 		5.5
(-3)
A 		14
B 21.8
(1.7)
A 		19.4
(-0.2)
A 		15.9
(-3)
A 		23.5
(3)
A 		8
C 18.3
(-0.2)
A 		27.1
(3)
A 		20.7
(0.7)
A 		10.6
(-3)
A 		17
avr 19.7
(2.5) 		20.3
(3) 		15.2
(-1.3) 		13.2
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 14.9
(-0.8)
A 		15.3
(-0.7)
A 		7.5
(-3)
A 		10.5
(-2.1)
A 		27.5
(3)
A 		15.7
(-0.5)
A 		20
B 13.4
(-1.7)
A 		15.9
(-1.1)
A 		8.6
(-2.7)
A 		7.2
(-3)
A 		35
(3)
A 		25.9
(1)
A 		28
C 11.6
(-2.2)
A 		20.4
(0.8)
A 		18.7
(0.2)
A 		9.4
(-3)
A 		13.9
(-1.4)
A 		26.7
(3)
P 		17
avr 13.3
(-1.4) 		17.2
(-0) 		11.6
(-2.1) 		9
(-3) 		25.5
(3) 		22.8
(2) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192769_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1913
Sequence Type Exemplar sequence
Representative Public ID F02E9.3 NCBI
Target Description F02E9.3 /REP_DB=WormBase Gene ID /WP=CE09186 /TR=O01317 /GB=CAB04050.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ubiquitin carboxyl-terminal hydrolase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059878(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059878 NCBI Caenorhabditis elegans F02E9.3 (F02E9.3) mRNA, complete cds. 10/11 None
GENEFINDER00000012713 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8412581:8414080:-1 10/11 None
SNAP00000012703 ENSEMBL cdna:SNAP chromosome:CEL140:I:8412672:8414080:-1 10/11 None
F02E9.3 ENSEMBL cdna:known chromosome:CEL140:I:8412672:8414080:-1 gene:F02E9.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8412602-8414011(-) 100.0 100.0
Public Domain and Genome References
Gene Title ubiquitin carboxyl-terminal hydrolase
Ensembl F02E9.3
Entrez Gene 184094 Entrez gene
SwissProt O01317 EMBL-EBI
WormBase CE34291 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04050 Hypothetical protein F02E9.3 [Caenorhabditis elegans] ref|NP_492279.2| F02E9.3 [Caenorhabditis elegans] 1.0E-119
blast CAE67270 Hypothetical protein CBG12718 [Caenorhabditis briggsae] 5.0E-38
blast CAE67270 Hypothetical protein CBG12718 [Caenorhabditis briggsae] 6.0E-38
blast CAA93109 Hypothetical protein C47E12.11 [Caenorhabditis elegans] ref|NP_501794.1| C47E12.11 [Caenorhabditis elegans] 6.0E-37
Sequence
Target Sequence 
>C. ELEGANS:192769_AT
gacgtcacgtgcaatccacgtatcaaagaaatggagtcaattcaacagacgtgaagacaa
aactgactatttggatgatgaaacaatgcagattttggaggatttgaagattttaaactg
taaaattagaaaacgattccaaattggaaccacgtgtccgcacagtttggcaaagaccga
cattttcccattgactgctccgaccgtattccctggtgctcgatcggagaaaactagaga
aacgacaagaaaagctgctcgtgcgtttgctagaatggaaaaagagagagaagatgctaa
taattcttcttcaagatcaagaaaaacatatcaaagtagaagcccgactggatctgaaga
ttcttctccagttatcaaattgacacgtgtcagttctggaactcgtttccctggagcttc
atctccaggaactcgtgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTCACGTGCAATCCACGTATCA 546 377 285 Antisense
CAAATTGGAACCACGTGTCCGCACA 449 193 424 Antisense
GTGTCCGCACAGTTTGGCAAAGACC 538 485 438 Antisense
CAAAGACCGACATTTTCCCATTGAC 147 193 455 Antisense
TATTCCCTGGTGCTCGATCGGAGAA 272 665 491 Antisense
AAAAGCTGCTCGTGCGTTTGCTAGA 375 131 534 Antisense
GAAGCCCGACTGGATCTGAAGATTC 7 345 623 Antisense
GAAGATTCTTCTCCAGTTATCAAAT 26 339 640 Antisense
TCAGTTCTGGAACTCGTTTCCCTGG 39 623 674 Antisense
CGTTTCCCTGGAGCTTCATCTCCAG 52 247 688 Antisense
AGCTTCATCTCCAGGAACTCGTGAG 150 79 699 Antisense
Sequence Source Affymetrix Proprietary Database