[Home] | [Total List]

[192767_at] Yeast hypothetical protein YIA2 like

Description T25B9.10 /REP_DB=WormBase Gene ID /WP=CE06509 /TR=Q17762 /GB=CAA94381.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast hypothetical protein YIA2 like
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 15      4grp_highest_8_8 > 52      4grp_high_8_8 > 17      6grp_highest_nonorm > 80      6grp_total > 16      4grp_total > 31      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 311
1 2 3 4 range
A 381.1
(3)
P 		175.8
(-1.2)
P 		89.6
(-3)
P 		255.9
(0.4)
P 		292
B 400.5
(3)
P 		146.1
(-2.4)
P 		116.2
(-3)
P 		253.6
(-0.1)
P 		284
C 391
(3)
P 		145
(-3)
P 		144
(-3)
P 		240.9
(-0.6)
P 		247
avr 390.9
(3) 		155.6
(-2.1) 		116.6
(-3) 		250.1
(-0.1) 		274

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 311.7
(3)
P 		238.1
(0.1)
P 		159.4
(-3)
P 		185
(-2)
P 		240.6
(0.2)
P 		168.4
(-2.6)
P 		152
B 345.8
(3)
P 		333.5
(2.6)
P 		146.9
(-2.8)
P 		156
(-2.5)
P 		138.6
(-3)
P 		156.4
(-2.5)
P 		207
C 339.8
(2.8)
P 		344.7
(3)
P 		223.6
(-1.8)
P 		200.8
(-2.8)
P 		201.5
(-2.7)
P 		194.8
(-3)
P 		150
avr 332.4
(3) 		305.4
(2) 		176.6
(-2.9) 		180.6
(-2.7) 		193.6
(-2.2) 		173.2
(-3) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 138.8
(3)
P 		38.2
(-2.2)
P 		23.4
(-3)
P 		37.5
(-2.3)
P 		115
B 127.7
(3)
P 		36.1
(-2.5)
P 		26.9
(-3)
P 		54.1
(-1.4)
P 		101
C 129.4
(3)
P 		41.7
(-2.9)
P 		50.2
(-2.4)
P 		40.6
(-3)
P 		89
avr 132
(3) 		38.7
(-2.7) 		33.5
(-3) 		44.1
(-2.4) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 57.5
(-0.3)
P 		84.7
(3)
P 		34.7
(-3)
P 		46.9
(-1.5)
P 		72.6
(1.5)
P 		41
(-2.2)
P 		50
B 120.3
(3)
P 		111
(2.3)
P 		35.7
(-3)
P 		41.3
(-2.6)
P 		56.3
(-1.5)
P 		58.3
(-1.4)
P 		85
C 125.9
(3)
P 		105.2
(1.5)
P 		56.9
(-1.8)
P 		40.4
(-3)
P 		65.2
(-1.3)
P 		65.2
(-1.3)
P 		86
avr 101.2
(3) 		100.3
(2.9) 		42.4
(-3) 		42.9
(-2.9) 		64.7
(-0.7) 		54.8
(-1.7) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192767_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8560
Sequence Type Exemplar sequence
Representative Public ID T25B9.10 NCBI
Target Description T25B9.10 /REP_DB=WormBase Gene ID /WP=CE06509 /TR=Q17762 /GB=CAA94381.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast hypothetical protein YIA2 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069598(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069598 NCBI Caenorhabditis elegans T25B9.10 (T25B9.10) mRNA, complete cds. 11/11 None
T25B9.10.1 ENSEMBL cdna:known chromosome:CEL140:IV:10770211:10773046:-1 gene:T25B9.10 11/11 None
T25B9.10.2 ENSEMBL cdna:known chromosome:CEL140:IV:10770211:10772719:-1 gene:T25B9.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028241 6/11 Cross Hyb Matching Probes None
GENEFINDER00000028250 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10770715-10771899(-) 99.03 100.0
Public Domain and Genome References
Gene Title Yeast hypothetical protein YIA2 like
Ensembl T25B9.10
Entrez Gene 177970 Entrez gene
SwissProt Q17762 EMBL-EBI
WormBase CE32212 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4437 inositol or phosphatidylinositol phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94381 Hypothetical protein T25B9.10 [Caenorhabditis elegans] emb|CAA94327.3| Hypothetical protein T25B9.10 [Caenorhabditis elegans] ref|NP_501999.2| T25B9.10 [Caenorhabditis elegans] 0.0
blast CAE70849 Hypothetical protein CBG17633 [Caenorhabditis briggsae] 1.0E-178
blast EAA00417 ENSANGP00000019166 [Anopheles gambiae str. PEST] ref|XP_320865.2| ENSANGP00000019166 [Anopheles gambiae str. PEST] 5.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 8.8E-32
Sequence
Target Sequence 
>C. ELEGANS:192767_AT
ttatcgcatctggtgcaatggcaaaaccagttcgaacgaaaggtgcaatcgcggtatgtc
ttcgtttatatcagcgatttatagtgcttatcggatgtcatttatcacatgcaacaccac
aacaacgtatccaagactacgctaaagtggtccgcactcttcgttttcctcagcttgcca
gatttcatgcacatgcaaaagacgaaatttttggttctgacgtggtgctttggattggag
atttgaatttccgggttactgtagagagcaatgtagactggagagatccggaaaagatta
cagagaaaacatttagagatgtttttgaaacagaagagcttgccagtcataggaaaaagc
aattagcattcacagatttcaaggaagctccaattaaattccctccaacacataaattcg
agccagacacagacaattatgtgccaaaaaggattccgtcttttactgaccgcgttctct
tttgggtaagaaactcggaatggctccaaaacattcagtacgattgtatgagaggaacaa
caccgtcggatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATCGCATCTGGTGCAATGGCAAA 194 681 416 Antisense
AGGTGCAATCGCGGTATGTCTTCGT 30 59 456 Antisense
GTCATTTATCACATGCAACACCACA 645 467 512 Antisense
TGCAACACCACAACAACGTATCCAA 108 577 525 Antisense
TACGCTAAAGTGGTCCGCACTCTTC 510 647 553 Antisense
TTTTCCTCAGCTTGCCAGATTTCAT 486 677 579 Antisense
TTGGTTCTGACGTGGTGCTTTGGAT 270 707 626 Antisense
GAAGCTCCAATTAAATTCCCTCCAA 28 343 799 Antisense
AATTCCCTCCAACACATAAATTCGA 317 173 812 Antisense
TGACCGCGTTCTCTTTTGGGTAAGA 707 411 882 Antisense
GAGAGGAACAACACCGTCGGATCAT 220 395 945 Antisense
Sequence Source Affymetrix Proprietary Database