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[192766_at] Zinc finger, C3HC4 type (RING finger)

Description ZK809.7 /REP_DB=WormBase Gene ID /WP=CE03835 /TR=Q23601 /GB=CAA92640.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_high1_10_10 > 53      6grp_total > 64      4grp_total > 08      6grp_cgc > 56      6grp_high1_sub > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 702
1 2 3 4 range
A 342.5
(-3)
A 		385.9
(-2.3)
A 		507.5
(-0.3)
P 		711.2
(3)
P 		369
B 329.8
(-3)
P 		403.7
(-2.3)
A 		491.3
(-1.4)
P 		933.7
(3)
P 		604
C 275.1
(-3)
A 		356.8
(-2.3)
A 		402.2
(-1.9)
P 		977
(3)
P 		702
avr 315.8
(-3) 		382.1
(-2.3) 		467
(-1.4) 		874
(3) 		558

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 423
1 2 3 4 5 6 range
A 406.7
(1.1)
M 		119.3
(-3)
A 		542.6
(3)
P 		288.8
(-0.6)
P 		361.6
(0.4)
P 		327.5
(-0)
P 		423
B 328.5
(-1.5)
P 		360.8
(0)
P 		393.3
(1.5)
P 		379.5
(0.9)
P 		295.9
(-3)
P 		424.4
(3)
P 		129
C 246.1
(-2.6)
A 		414.6
(1.3)
P 		310.9
(-1.1)
A 		486.3
(3)
P 		230
(-3)
M 		419.4
(1.4)
P 		256
avr 327.1
(-1.4) 		298.2
(-2.9) 		415.6
(3) 		384.9
(1.5) 		295.8
(-3) 		390.4
(1.7) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 124.7
(2)
A 		83.8
(-3)
A 		132.7
(3)
P 		104.1
(-0.5)
P 		49
B 105.2
(-2.7)
P 		99.7
(-3)
A 		113.8
(-2.1)
P 		199
(3)
P 		99
C 91.1
(-3)
A 		102.6
(-2.1)
A 		140.2
(1)
P 		164.7
(3)
P 		74
avr 107
(-1.8) 		95.4
(-3) 		128.9
(0.3) 		155.9
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 75
(-0.4)
M 		42.4
(-3)
A 		118.2
(3)
P 		73.2
(-0.6)
P 		109.1
(2.3)
P 		79.7
(-0)
P 		76
B 114.3
(-1.2)
P 		120.1
(-0.6)
P 		95.5
(-3)
P 		100.5
(-2.5)
P 		120.2
(-0.6)
P 		158.3
(3)
P 		63
C 91.2
(-1.5)
A 		126.5
(1.7)
P 		79.1
(-2.6)
A 		97.8
(-0.9)
P 		74.4
(-3)
M 		140.4
(3)
P 		66
avr 93.5
(-2.5) 		96.3
(-2) 		97.6
(-1.8) 		90.5
(-3) 		101.2
(-1.2) 		126.1
(3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192766_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9320
Sequence Type Exemplar sequence
Representative Public ID ZK809.7 NCBI
Target Description ZK809.7 /REP_DB=WormBase Gene ID /WP=CE03835 /TR=Q23601 /GB=CAA92640.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069800(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069800 NCBI Caenorhabditis elegans PeRoXisome assembly factor family member (prx-2) (prx-2) mRNA, complete cds. 11/11 None
SNAP00000011180 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11644171:11646160:1 10/11 None
GENEFINDER00000011192 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11644171:11646436:1 10/11 None
ZK809.7 ENSEMBL cdna:known chromosome:CEL140:IV:11644006:11646701:1 gene:ZK809.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11644011-11646166(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Gene Symbol prx-2
Ensembl ZK809.7
Entrez Gene 178094 Entrez gene
SwissProt Q23601 EMBL-EBI
WormBase CE03835 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92640 Hypothetical protein ZK809.7 [Caenorhabditis elegans] ref|NP_502201.1| PeRoXisome assembly factor family member (prx-2) [Caenorhabditis elegans] 1.0E-177
blast CAA92640 Hypothetical protein ZK809.7 [Caenorhabditis elegans] ref|NP_502201.1| PeRoXisome assembly factor family member (prx-2) [Caenorhabditis elegans] 1.0E-137
blast CAE62081 Hypothetical protein CBG06104 [Caenorhabditis briggsae] 1.0E-130
blast CAE62081 Hypothetical protein CBG06104 [Caenorhabditis briggsae] 1.0E-112
blast NP_001016841 peroxisomal membrane protein 3, 35kDa (Zellweger syndrome) [Xenopus tropicalis] 4.0E-16
blast NP_001016841 peroxisomal membrane protein 3, 35kDa (Zellweger syndrome) [Xenopus tropicalis] 5.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.0E-5
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.0E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502201.1 1 32-54
ZK809.7 1 32-54
Sequence
Target Sequence 
>C. ELEGANS:192766_AT
gaagctgttttatggacgcaccggttttcaagaggcgcttcacctggtcaagaacaaatg
gatattgcatacgcgggatatactccaaaattgataactagtcattttatggttgaagta
attgttccatatttaacacgacgaatgtcagaattgagtggaagaattgatatttccaga
atgtattctaagattgaggcaatttatgaactcggcagccttctccattttctctatttc
cttcgatcagcttcgatcaactacgacactcagaatcgggaacttatgtggcacgcgttt
cgtgacgtcatcctcctcacatacccattcattgaaaaagcccgccaacgaattgtcaaa
aaacagaaattggatcgaaaattcacatcttcgataggatcatctgatattgaatgtgtt
gtgtgtgacaagccgtcagtaattcctatggttgggcagaagtgtggacacgtggcatgt
tatacgtgtattgccacgtcacgaaacatgacgtgtccattgtgctcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTGTTTTATGGACGCACCGGT 67 339 340 Antisense
GACGCACCGGTTTTCAAGAGGCGCT 449 379 354 Antisense
GGCGCTTCACCTGGTCAAGAACAAA 675 541 373 Antisense
TTTATGAACTCGGCAGCCTTCTCCA 577 673 542 Antisense
CTCTATTTCCTTCGATCAGCTTCGA 445 229 571 Antisense
TCAGCTTCGATCAACTACGACACTC 165 625 586 Antisense
GGAACTTATGTGGCACGCGTTTCGT 162 527 618 Antisense
CTCCTCACATACCCATTCATTGAAA 360 235 652 Antisense
GAAAAAGCCCGCCAACGAATTGTCA 311 355 673 Antisense
AAGCCGTCAGTAATTCCTATGGTTG 587 149 769 Antisense
ACATGACGTGTCCATTGTGCTCAGA 473 107 845 Antisense
Sequence Source Affymetrix Proprietary Database