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[192764_at] ADP ribosylation factor

Description ZK632.8 /REP_DB=WormBase Gene ID /WP=CE00425 /GEN=arl-2 /TR=SW:P34212 /GB=CAA80185.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=ADP ribosylation factor
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 82      4grp_highest_8_8 > 04      4grp_high_8_8 > 37      6grp_highest_nonorm > 62      6grp_total > 80      4grp_total > 34      6grp_highest_sub > 04      6grp_cgc > 86      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 169.5
(-3)
P 		297.6
(3)
P 		226.3
(-0.3)
P 		266.2
(1.5)
P 		128
B 270.2
(1.7)
P 		273.2
(3)
P 		259.7
(-3)
P 		264.7
(-0.8)
P 		14
C 196.6
(-3)
P 		245
(3)
P 		238.6
(2.2)
P 		244.2
(2.9)
P 		48
avr 212.1
(-3) 		271.9
(3) 		241.5
(-0.1) 		258.4
(1.6) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 565
1 2 3 4 5 6 range
A 323.4
(-3)
P 		333.3
(-2.9)
P 		479.3
(-1)
P 		786.6
(3)
P 		553.5
(-0)
P 		470.5
(-1.1)
P 		463
B 360.2
(-2.1)
P 		298.2
(-3)
P 		488.3
(-0.1)
P 		692.9
(3)
P 		570.5
(1.1)
P 		452
(-0.7)
P 		395
C 305.7
(-3)
P 		358.1
(-2.4)
P 		366.7
(-2.3)
P 		863.1
(3)
P 		493.1
(-1)
P 		482.6
(-1.1)
P 		557
avr 329.8
(-3) 		329.9
(-3) 		444.8
(-1.5) 		780.9
(3) 		539
(-0.2) 		468.4
(-1.2) 		451
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 61.7
(2.3)
P 		64.6
(3)
P 		59.2
(1.7)
P 		39
(-3)
P 		26
B 86.2
(3)
P 		67.5
(-0.8)
P 		60.2
(-2.2)
P 		56.4
(-3)
P 		30
C 65.1
(0.4)
P 		70.4
(1.2)
P 		83.1
(3)
P 		41.2
(-3)
P 		42
avr 71
(3) 		67.5
(2.2) 		67.5
(2.2) 		45.5
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 59.6
(-3)
P 		118.5
(-0.5)
P 		104.4
(-1.1)
P 		199.5
(3)
P 		167
(1.6)
P 		114.5
(-0.6)
P 		140
B 125.3
(-1.8)
P 		99.3
(-3)
P 		118.6
(-2.1)
P 		183.5
(0.8)
P 		231.8
(3)
P 		168.6
(0.1)
P 		133
C 113.3
(-1.5)
P 		109.3
(-1.8)
P 		93.3
(-3)
P 		173.6
(3)
P 		159.6
(2)
P 		161.6
(2.1)
P 		80
avr 99.4
(-3) 		109
(-2.3) 		105.4
(-2.6) 		185.5
(3) 		186.1
(3) 		148.2
(0.4) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192764_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6305
Sequence Type Exemplar sequence
Representative Public ID ZK632.8 NCBI
Target Description ZK632.8 /REP_DB=WormBase Gene ID /WP=CE00425 /GEN=arl-2 /TR=SW:P34212 /GB=CAA80185.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=ADP ribosylation factor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066777(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066777 NCBI Caenorhabditis elegans ARF-Like family member (arl-5) (arl-5) mRNA, complete cds. 11/11 None
SNAP00000031478 ENSEMBL cdna:SNAP chromosome:CEL140:III:9823147:9823868:1 11/11 None
GENEFINDER00000031493 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9823147:9823868:1 11/11 None
ZK632.8 ENSEMBL cdna:known chromosome:CEL140:III:9823147:9823868:1 gene:ZK632.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9823142-9823864(+) 100.0 100.0
Public Domain and Genome References
Gene Title ADP ribosylation factor
Gene Symbol arl-5
Ensembl ZK632.8
Entrez Gene 176392 Entrez gene
SwissProt P34212 EMBL-EBI
WormBase CE00425 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256838_AT ADP-ribosylation factor, putative at
CANINE_2:CFAAFFX.7563.1.S1_AT similar to ADP-ribosylation factor-like 8 cfa
DROSOPHILA_2:1637106_AT dm
DROSGENOME1:154562_AT dm
CHICKEN:GGA.16485.1.S1_AT ADP-ribosylation factor-like 8 gga
HU35KSUBD:RC_AA621363_AT ADP-ribosylation factor-like 8 hs
U133_X3P:HS.127221.0.A1_3P_AT ADP-ribosylation factor-like 8 hs
HG-U133_PLUS_2:242727_AT ADP-ribosylation factor-like 8 hs
HG-U133B:242727_AT ADP-ribosylation factor-like 8 hs
HG-U95D:71993_AT ADP-ribosylation factor-like 8 hs
HG-U95D:77134_AT ADP-ribosylation factor-like 8 hs
HG-U133_PLUS_2:226345_AT ADP-ribosylation factor-like 8 hs
HG-U133B:226345_AT ADP-ribosylation factor-like 8 hs
HU35KSUBA:RC_AA236034_AT ADP-ribosylation factor-like 8 hs
U133_X3P:HS.25362.0.S1_3P_AT ADP-ribosylation factor-like 8 hs
HG-U95B:43939_AT ADP-ribosylation factor-like 8 hs
HG-U95E:72927_AT ADP-ribosylation factor-like 8 hs
MOUSE430_2:1453590_AT ADP-ribosylation factor-like 8 mm
MOE430B:1453590_AT ADP-ribosylation factor-like 8 mm
MU11KSUBB:MSA.20842.0_S_AT ADP-ribosylation factor-like 8 mm
MOE430B:1437884_AT ADP-ribosylation factor-like 8 mm
MOUSE430_2:1437884_AT ADP-ribosylation factor-like 8 mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA80185 Hypothetical protein ZK632.8 [Caenorhabditis elegans] ref|NP_499178.1| ARF-Like family member (arl-5) [Caenorhabditis elegans] sp|P34212|ARL5_CAEEL ADP-ribosylation factor-like protein 7.0E-91
blast CAE65120 Hypothetical protein CBG09985 [Caenorhabditis briggsae] 5.0E-85
blast AAF50451 CG7197-PA [Drosophila melanogaster] gb|EAL31246.1| GA20174-PA [Drosophila pseudoobscura] gb|AAM11373.1| LD31204p [Drosophila melanogaster] ref|NP_648201.1| CG7197-PA [Drosophila melanogaster] 4.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR006689 EMBL-EBI ARF/SAR superfamily 8.8E-111
Sequence
Target Sequence 
>C. ELEGANS:192764_AT
agtcggtctcgataatgcagggaaaacgacgattttatataattatgtgacaaaagatca
agttgaaacgaagccaacaattggaagcaacgtcgaagaagtttcgtatcgaaatttaga
ttttgtgatctgggatattggcgggcaggagagtctacgaaagtcttggagtacttatta
tgttcaaacagatgttgttatagttgttattgacagttccgacaccactaggattccaat
tatgaaagaacaactgcacaatatgcttcaacatgaagatcttgctcgtgctcatattct
ggttttggccaacaaacaggatctgcccggagcaatgaatccagcagaagtatccacaca
actcggtctccagacattacgaggtgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCGGTCTCGATAATGCAGGGAAA 67 61 78 Antisense
ATTGGCGGGCAGGAGAGTCTACGAA 423 3 214 Antisense
GTTATTGACAGTTCCGACACCACTA 75 449 283 Antisense
GTTCCGACACCACTAGGATTCCAAT 140 441 293 Antisense
GAACAACTGCACAATATGCTTCAAC 255 353 325 Antisense
AACATGAAGATCTTGCTCGTGCTCA 583 137 347 Antisense
TCGTGCTCATATTCTGGTTTTGGCC 50 605 363 Antisense
GGCCAACAAACAGGATCTGCCCGGA 41 545 384 Antisense
GATCTGCCCGGAGCAATGAATCCAG 207 417 397 Antisense
GCAGAAGTATCCACACAACTCGGTC 325 313 421 Antisense
GGTCTCCAGACATTACGAGGTGCTC 437 503 442 Antisense
Sequence Source Affymetrix Proprietary Database