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[192763_at] Ribosomal protein S19e

Description T05F1.3 /REP_DB=WormBase Gene ID /WP=CE13265 /GEN=rps-19 /TR=SW:O18650 /GB=CAB04689.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Ribosomal protein S19e
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_highest_8_8 > 14      4grp_high_8_8 > 15      6grp_highest_nonorm > 09      6grp_total > 52      4grp_total > 08      6grp_highest_sub > 03      6grp_cgc > 92      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23560
1 2 3 4 range
A 25875.7
(-3)
P 		28072.4
(-2.4)
P 		30471.7
(-1.7)
P 		46851
(3)
P 		20975
B 23742.1
(-3)
P 		26251.1
(-1.8)
P 		31182.4
(0.5)
P 		36645.1
(3)
P 		12903
C 23291
(-3)
P 		25874
(-2.2)
P 		24143.5
(-2.7)
P 		43645.8
(3)
P 		20355
avr 24302.9
(-3) 		26732.5
(-2.2) 		28599.2
(-1.6) 		42380.6
(3) 		18078

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8764
1 2 3 4 5 6 range
A 24641.4
(0.2)
P 		22545
(-1.4)
P 		28277.4
(3)
P 		24540.5
(0.2)
P 		20383.6
(-3)
P 		22079.6
(-1.7)
P 		7894
B 21268.6
(-0.7)
P 		22219.5
(2.6)
P 		22341.7
(3)
P 		21800.3
(1.1)
P 		20608.8
(-3)
P 		20870.8
(-2.1)
P 		1733
C 19583.8
(-2.9)
P 		22029.8
(-0.4)
P 		25327
(3)
P 		24913.2
(2.6)
P 		19513.4
(-3)
P 		23026
(0.6)
P 		5814
avr 21831.3
(-1.1) 		22264.8
(-0.6) 		25315.4
(3) 		23751.3
(1.2) 		20168.6
(-3) 		21992.1
(-0.9) 		5147
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3328
1 2 3 4 range
A 9421.4
(3)
P 		6093.8
(-3)
P 		7965.9
(0.4)
P 		6858.1
(-1.6)
P 		3328
B 7571.2
(1.9)
P 		6483.4
(-3)
P 		7225.7
(0.4)
P 		7809.1
(3)
P 		1326
C 7710
(-1)
P 		7438.9
(-2.5)
P 		8414.7
(3)
P 		7359.4
(-3)
P 		1055
avr 8234.2
(3) 		6672
(-3) 		7868.8
(1.6) 		7342.2
(-0.4) 		1562

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3831
1 2 3 4 5 6 range
A 4542.4
(-3)
P 		8018.1
(3)
P 		6158.2
(-0.2)
P 		6224
(-0.1)
P 		6150.9
(-0.2)
P 		5375.7
(-1.6)
P 		3476
B 7400.4
(1)
P 		7395.9
(1)
P 		5425.2
(-3)
P 		5774.1
(-2.3)
P 		8373.1
(3)
P 		7782.6
(1.8)
P 		2948
C 7258.9
(2)
P 		6722
(0.8)
P 		6446.2
(0.2)
P 		5010.1
(-3)
P 		6314.3
(-0.1)
P 		7708.1
(3)
P 		2698
avr 6400.6
(-0.4) 		7378.7
(3) 		6009.9
(-1.8) 		5669.4
(-3) 		6946.1
(1.5) 		6955.5
(1.5) 		1709
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192763_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1577
Sequence Type Exemplar sequence
Representative Public ID T05F1.3 NCBI
Target Description T05F1.3 /REP_DB=WormBase Gene ID /WP=CE13265 /GEN=rps-19 /TR=SW:O18650 /GB=CAB04689.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Ribosomal protein S19e
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060154(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060154 NCBI Caenorhabditis elegans Ribosomal Protein, Small subunit family member (rps-19) (rps-19) mRNA, complete cds. 11/11 A 
SNAP00000020941 ENSEMBL cdna:SNAP chromosome:CEL140:I:9633229:9633913:-1 11/11 None
GENEFINDER00000020955 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9633229:9633913:-1 11/11 None
T05F1.3.1 ENSEMBL cdna:known chromosome:CEL140:I:9633174:9633924:-1 gene:T05F1.3 11/11 A 
T05F1.3.3 ENSEMBL cdna:known chromosome:CEL140:I:9633176:9634282:-1 gene:T05F1.3 11/11 A 
T05F1.3.2 ENSEMBL cdna:known chromosome:CEL140:I:9633176:9633918:-1 gene:T05F1.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9633159-9633844(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ribosomal protein S19e
Gene Symbol rps-19
Ensembl T05F1.3
Entrez Gene 172805 Entrez gene
SwissProt O18650 EMBL-EBI
WormBase CE13265 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258858_AT 40S ribosomal protein S19 (RPS19A) at
DROSOPHILA_2:1637448_S_AT Ribosomal protein S19a dm
DROSGENOME1:143619_AT Ribosomal protein S19a dm
RG-U34A:X51707CDS_S_AT similar to ribosomal protein S19 rn
RG-U34C:RC_AI177042_I_AT similar to ribosomal protein S19 rn
YEAST_2:1776940_S_AT Protein component of the small (40S) ribosomal subunit; nearly identical to Rps19Bp and has similarity to rat S19 ribosomal protein Sc
YEAST_2:1777241_AT Protein component of the small (40S) ribosomal subunit; nearly identical to Rps19Bp and has similarity to rat S19 ribosomal protein Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04689 Hypothetical protein T05F1.3 [Caenorhabditis elegans] ref|NP_492555.1| Ribosomal Protein, Small subunit family member (rps-19) [Caenorhabditis elegans] sp|O18650|RS19_CAEEL 40S ribosomal protein S19 gb|AAB69445.1| ribosomal protein S19 [Caenorhabditis elegans] 2.0E-80
blast CAE60155 Hypothetical protein CBG03707 [Caenorhabditis briggsae] 6.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR001266 EMBL-EBI Ribosomal protein S19e 2.2E-81
Sequence
Target Sequence 
>C. ELEGANS:192763_AT
agagcgacctccatcaaggacgtcgaccagcacgaggctaccaagtccatcgctcacttc
ttgaagaagagtggaaaggttaaggttccagagtggtccgatcttgttaagctcggagtc
aacaaggagcttgccccagtcgatccagattggttctacacccgtgctgccagtcttgct
cgtcacttgtatttccgccccgccggaatcggagccttcaagaaggtctacggaggaaac
aagagacgtggtgttgcaccaaaccatttccaaacctcagctggaaactgcctcagaaag
gctgttcagcaactcgagaagatcaagtgggttgagaagcacccagacggcaaaggaaga
attctctccaagcagggacgcaaggatcttgacagaatcgccacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGCGACCTCCATCAAGGACGTCG 396 55 19 Antisense
CATCAAGGACGTCGACCAGCACGAG 650 207 30 Antisense
TCCATCGCTCACTTCTTGAAGAAGA 327 591 64 Antisense
AAGGTTCCAGAGTGGTCCGATCTTG 261 159 100 Antisense
GAGTGGTCCGATCTTGTTAAGCTCG 70 401 109 Antisense
CGATCTTGTTAAGCTCGGAGTCAAC 325 247 117 Antisense
GGAGTCAACAAGGAGCTTGCCCCAG 389 517 133 Antisense
TGCCCCAGTCGATCCAGATTGGTTC 39 585 150 Antisense
CGATCCAGATTGGTTCTACACCCGT 78 249 159 Antisense
GAATTCTCTCCAAGCAGGGACGCAA 269 325 377 Antisense
CAAGGATCTTGACAGAATCGCCACC 73 185 399 Antisense
Sequence Source Affymetrix Proprietary Database