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[192762_at] Zinc finger, C3HC4 type (RING finger)

Description C11H1.3 /REP_DB=WormBase Gene ID /WP=CE05262 /TR=Q17911 /GB=CAA94116.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      4grp_highest_8_8 > 04      4grp_high_8_8 > 37      6grp_highest_nonorm > 81      6grp_total > 09      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 300.1
(-2)
P 		365.7
(3)
P 		286.7
(-3)
P 		357.9
(2.4)
P 		79
B 243
(-3)
P 		376.3
(3)
P 		267.6
(-1.9)
P 		254.1
(-2.5)
P 		133
C 262.9
(-3)
P 		353.1
(3)
P 		335
(1.8)
P 		290.7
(-1.2)
P 		90
avr 268.7
(-3) 		365
(3) 		296.4
(-1.3) 		300.9
(-1) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 324.4
(2.1)
P 		264.9
(-2)
P 		250.2
(-3)
P 		338.3
(3)
P 		252.2
(-2.9)
P 		312.5
(1.2)
P 		88
B 305.4
(3)
P 		275.4
(0)
P 		289.1
(1.4)
P 		287.9
(1.3)
P 		256.9
(-1.8)
P 		244.9
(-3)
P 		61
C 386.9
(3)
P 		286.6
(-0.5)
P 		250.9
(-1.8)
P 		349.2
(1.7)
P 		217.1
(-3)
P 		252.6
(-1.7)
P 		170
avr 338.9
(3) 		275.6
(-0.9) 		263.4
(-1.7) 		325.1
(2.1) 		242.1
(-3) 		270
(-1.3) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 109.3
(3)
P 		79.4
(-0.2)
P 		74.9
(-0.6)
P 		52.4
(-3)
P 		57
B 77.5
(0.6)
P 		92.9
(3)
P 		62
(-1.8)
P 		54.2
(-3)
P 		39
C 87
(0.4)
P 		101.5
(1.6)
P 		116.8
(3)
P 		49
(-3)
P 		68
avr 91.3
(3) 		91.3
(3) 		84.6
(2) 		51.9
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 59.8
(-2.2)
P 		94.2
(3)
P 		54.5
(-3)
P 		85.8
(1.7)
P 		76.1
(0.3)
P 		76.1
(0.3)
P 		40
B 106.3
(3)
P 		91.7
(0.6)
P 		70.2
(-3)
P 		76.3
(-2)
P 		104.4
(2.7)
P 		91.3
(0.5)
P 		36
C 143.4
(3)
P 		87.4
(-1.2)
P 		63.9
(-3)
P 		70.2
(-2.5)
P 		70.2
(-2.5)
P 		84.6
(-1.4)
P 		80
avr 103.2
(3) 		91.1
(1.2) 		62.9
(-3) 		77.4
(-0.8) 		83.6
(0.1) 		84
(0.1) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192762_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17807
Sequence Type Exemplar sequence
Representative Public ID C11H1.3 NCBI
Target Description C11H1.3 /REP_DB=WormBase Gene ID /WP=CE05262 /TR=Q17911 /GB=CAA94116.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C3HC4 type (RING finger)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077984(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077984 NCBI Caenorhabditis elegans C11H1.3 (C11H1.3) mRNA, complete cds. 11/11 None
SNAP00000018161 ENSEMBL cdna:SNAP chromosome:CEL140:X:14308172:14311588:-1 11/11 None
GENEFINDER00000018171 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14308172:14311588:-1 11/11 None
C11H1.3 ENSEMBL cdna:known chromosome:CEL140:X:14308172:14311602:-1 gene:C11H1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14308171-14311588(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C3HC4 type (RING finger)
Ensembl C11H1.3
Entrez Gene 181537 Entrez gene
SwissProt Q17911 EMBL-EBI
WormBase CE05262 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256400_AT zinc finger (C3HC4-type RING finger) family protein at
CANINE_2:CFAAFFX.8515.1.S1_AT similar to ring finger protein 157 cfa
CANINE_2:CFAAFFX.8515.1.S1_S_AT similar to ring finger protein 157 cfa
DROSOPHILA_2:1631199_AT dm
DROSGENOME1:154676_AT dm
CHICKEN:GGAAFFX.1313.1.S1_AT similar to KIAA1917 protein gga
CHICKEN:GGAAFFX.1335.1.S1_AT similar to KIAA1917 protein gga
CHICKEN:GGAAFFX.1335.2.S1_S_AT similar to KIAA1917 protein gga
U133_X3P:HS2.438501.1.S1_3P_AT ring finger protein 157 hs
U133_X3P:HS.294151.0.S1_3P_AT ring finger protein 157 hs
HG-U133_PLUS_2:1569775_AT ring finger protein 157 hs
HG-U133_PLUS_2:226433_AT ring finger protein 157 hs
HG-U133B:226433_AT ring finger protein 157 hs
HG-U95B:44600_AT ring finger protein 157 hs
HG-U95E:77732_R_AT ring finger protein 157 hs
HG-U95C:53626_AT Ring finger protein 157 hs
HG-U95D:85755_AT Ring finger protein 157 hs
HU35KSUBB:RC_AA016036_AT Ring finger protein 157 hs
HU35KSUBA:RC_AA452113_AT Ring finger protein 157 hs
MOE430B:1453720_AT ring finger protein 157 mm
MOUSE430_2:1453720_AT ring finger protein 157 mm
MG-U74CV2:168270_AT ring finger protein 157 mm
MG-U74CV2:167218_AT ring finger protein 157 mm
MOE430A:1454953_AT ring finger protein 157 mm
MOUSE430A_2:1454953_AT ring finger protein 157 mm
MOUSE430_2:1454953_AT ring finger protein 157 mm
MOE430A:1434427_A_AT ring finger protein 157 mm
MOUSE430A_2:1434427_A_AT ring finger protein 157 mm
MOUSE430_2:1434427_A_AT ring finger protein 157 mm
MOE430B:1434902_AT ring finger protein 157 mm
MOUSE430_2:1434902_AT ring finger protein 157 mm
Protein Similarities
Method ID Description E-Value
blast CAA94116 Hypothetical protein C11H1.3 [Caenorhabditis elegans] ref|NP_510385.1| C11H1.3 [Caenorhabditis elegans] 0.0
blast CAE63008 Hypothetical protein CBG07248 [Caenorhabditis briggsae] 0.0
blast XP_624563 PREDICTED: similar to LD34250p [Apis mellifera] 4.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 2.7E-7
Sequence
Target Sequence 
>C. ELEGANS:192762_AT
tagtggaaggtctcaacgggtcgccaactccaatccctacggtcactgatccagtcaacc
caacagtcaactcttcaactcgacgaaaacgtcattcaagtagcaaaagtagcaatggga
aatcaatgcaccaagttctcacgatggagcagctaggagatgaagaagtgaaggagtgca
tagaaatgtcttatattgcaaatgagcatgacaccgatgaggacgacgaggatgaaaaga
aaagagtttctgaaaaagatgtacccattagtcaagttgaaagtgaagatggatccagtg
ggtcaagttcgcaaccacttcagaaacatcactcctccgtgtcggacatttcagagtcag
aggaagaatccgagccaccacaacgcgaagttagcaaaccttccgaagattgtgaatcta
aaaaatctgaagaatctgaagatgatgaacgaaaatcccaagcagcgcattctgatgatg
atagtgttacagcgaatgaagattctgcgcgacgaaattctgaaaagagacgttcgttcc
aaaccagctctcggaactctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGTGGAAGGTCTCAACGGGTCGCC 365 625 1010 Antisense
TCCCTACGGTCACTGATCCAGTCAA 116 599 1043 Antisense
TCAACCCAACAGTCAACTCTTCAAC 88 631 1064 Antisense
AAATCAATGCACCAAGTTCTCACGA 355 117 1129 Antisense
TGGATCCAGTGGGTCAAGTTCGCAA 108 551 1299 Antisense
AGTTCGCAACCACTTCAGAAACATC 657 63 1315 Antisense
ACTCCTCCGTGTCGGACATTTCAGA 115 99 1340 Antisense
AGCCACCACAACGCGAAGTTAGCAA 552 83 1382 Antisense
AAATCCCAAGCAGCGCATTCTGATG 370 117 1462 Antisense
AAGAGACGTTCGTTCCAAACCAGCT 281 129 1534 Antisense
TTCCAAACCAGCTCTCGGAACTCTT 70 697 1546 Antisense
Sequence Source Affymetrix Proprietary Database