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[192761_s_at] tyrosine specific protein phosphatase

Description T22C1.8 /REP_DB=WormBase Gene ID /WP=CE18278 /TR=Q22668 /GB=CAA99930.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=tyrosine specific protein phosphatase
Cluster 6grp_total > 98      4grp_total > 44      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 119.8
(3)
A 		73.3
(-0.1)
A 		85
(0.6)
A 		31.1
(-3)
A 		89
B 42.9
(-3)
A 		86.2
(0.8)
A 		79.3
(0.2)
A 		111.7
(3)
A 		69
C 80.6
(0.6)
A 		104.9
(3)
A 		49
(-2.6)
A 		44.7
(-3)
A 		60
avr 81.1
(1.4) 		88.1
(3) 		71.1
(-1) 		62.5
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 27.8
(-2.5)
A 		68.1
(-0.5)
A 		18.2
(-3)
A 		58.9
(-1)
A 		117.9
(1.9)
A 		139.8
(3)
M 		122
B 25.5
(-2.3)
A 		22.5
(-2.4)
A 		12.2
(-3)
A 		66.4
(0)
A 		120.6
(3)
A 		87.6
(1.2)
A 		108
C 127.7
(1.9)
A 		16.1
(-3)
A 		41.7
(-1.9)
A 		54.3
(-1.3)
A 		110.6
(1.2)
P 		151.5
(3)
A 		135
avr 60.3
(-0.9) 		35.6
(-2.3) 		24
(-3) 		59.9
(-0.9) 		116.4
(2.4) 		126.3
(3) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 43.6
(3)
A 		15.9
(-1.3)
A 		22.2
(-0.3)
A 		4.5
(-3)
A 		39
B 13.7
(-3)
A 		21.3
(1.5)
A 		18.4
(-0.2)
A 		23.8
(3)
A 		10
C 26.7
(2.1)
A 		30.2
(3)
A 		17.1
(-0.5)
A 		7.5
(-3)
A 		23
avr 28
(3) 		22.5
(1) 		19.2
(-0.3) 		11.9
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 5.1
(-2.8)
A 		24.2
(0.8)
A 		4
(-3)
A 		14.9
(-0.9)
A 		35.6
(3)
A 		34
(2.7)
M 		32
B 8.9
(-2.2)
A 		7.5
(-2.4)
A 		3
(-3)
A 		17.6
(-1.1)
A 		49
(3)
A 		32.7
(0.9)
A 		46
C 47.3
(2.6)
A 		4.9
(-3)
A 		10.6
(-2.3)
A 		10.9
(-2.2)
A 		35.8
(1)
P 		50.7
(3)
A 		46
avr 20.4
(-0.5) 		12.2
(-1.9) 		5.9
(-3) 		14.5
(-1.5) 		40.1
(3) 		39.1
(2.8) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192761_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1159
Sequence Type Exemplar sequence
Representative Public ID T22C1.8 NCBI
Target Description T22C1.8 /REP_DB=WormBase Gene ID /WP=CE18278 /TR=Q22668 /GB=CAA99930.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=tyrosine specific protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059793(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059793 NCBI Caenorhabditis elegans T22C1.8 (T22C1.8) mRNA, complete cds. 11/11 None
GENEFINDER00000000071 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7964183:7966445:-1 11/11 None
SNAP00000000052 ENSEMBL cdna:SNAP chromosome:CEL140:I:7964254:7966445:-1 11/11 None
T22C1.8 ENSEMBL cdna:known chromosome:CEL140:I:7964113:7966570:-1 gene:T22C1.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7964113-7966376(-) 100.0 100.0
Public Domain and Genome References
Gene Title tyrosine specific protein phosphatase
Ensembl T22C1.8
Entrez Gene 172571 Entrez gene
SwissProt Q22668 EMBL-EBI
WormBase CE18278 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99930 Hypothetical protein T22C1.8 [Caenorhabditis elegans] ref|NP_492194.1| T22C1.8 [Caenorhabditis elegans] 0.0
blast CAE57416 Hypothetical protein CBG00373 [Caenorhabditis briggsae] 0.0
blast CAE72790 Hypothetical protein CBG20059 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 4.2E-101
Sequence
Target Sequence 
>C. ELEGANS:192761_S_AT
gttgagcttctcacttggaacatccagcagttcatccagacacgtggaaaagtggatcac
gtaccaacaacaccatccacaccagcactcaacatcattccagctgatgccaagcctgtt
ccagttgttccaaaagaagctactccacatcattctccagcagaaaaagcacaagaatgc
atggaaaagatttgcgaaaagattctgaaacctatcaaaaaggacaaagaatgcaaagag
cacaaatctccgaagactgaacatccaaaagaatgcaaagatcatccacttccactcgaa
acaagatcttcttcggaagatggacctgatatggaagaccaaaaaactcaggcgacgcaa
aaagttgagatcaaagaggaaactgctgcccagaatgacaatatcagcatgatctctctt
ccaaatgaaccacttctgtcgattcccgttgtgagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGAGCTTCTCACTTGGAACATCC 638 437 1189 Antisense
TCCAGCAGTTCATCCAGACACGTGG 609 589 1211 Antisense
GTGGATCACGTACCAACAACACCAT 55 491 1240 Antisense
TCATTCCAGCTGATGCCAAGCCTGT 198 619 1283 Antisense
CAAGCCTGTTCCAGTTGTTCCAAAA 473 153 1299 Antisense
AAAGAAGCTACTCCACATCATTCTC 27 123 1321 Antisense
TCATCCACTTCCACTCGAAACAAGA 482 621 1470 Antisense
GAGGAAACTGCTGCCCAGAATGACA 371 403 1564 Antisense
TATCAGCATGATCTCTCTTCCAAAT 249 659 1590 Antisense
AAATGAACCACTTCTGTCGATTCCC 266 119 1611 Antisense
CTTCTGTCGATTCCCGTTGTGAGAA 700 219 1621 Antisense
Sequence Source Affymetrix Proprietary Database