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[192759_at]

Description ZC302.2 /REP_DB=WormBase Gene ID /WP=CE06574 /TR=SW:Q23256 /GB=CAA98293.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=guanine nucleotide binding protein
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 92      6grp_total > 88      4grp_total > 43      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 156.8
(1.6)
P 		122.5
(-3)
P 		167
(3)
P 		128.4
(-2.2)
P 		45
B 124.9
(-1)
P 		173.6
(3)
P 		100.4
(-3)
P 		103.2
(-2.8)
P 		73
C 105.2
(-3)
P 		122
(-0.2)
P 		115.9
(-1.2)
P 		141.8
(3)
P 		37
avr 129
(-1.2) 		139.4
(3) 		127.8
(-1.7) 		124.5
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 544
1 2 3 4 5 6 range
A 96.6
(-3)
P 		133.9
(-2.6)
P 		138.9
(-2.5)
P 		185.9
(-1.9)
P 		352.1
(0.1)
P 		594.5
(3)
P 		498
B 108.1
(-3)
P 		159.8
(-2.4)
P 		130.8
(-2.7)
P 		156.8
(-2.5)
P 		388.4
(0.2)
P 		640.9
(3)
P 		533
C 152.1
(-2.4)
P 		134.9
(-2.6)
P 		100.3
(-3)
P 		173.6
(-2.1)
P 		372.4
(0.4)
P 		579.9
(3)
P 		480
avr 118.9
(-3) 		142.9
(-2.7) 		123.3
(-2.9) 		172.1
(-2.3) 		371
(0.1) 		605.1
(3) 		486
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 57.1
(3)
P 		26.6
(-1.8)
P 		43.7
(0.9)
P 		18.8
(-3)
P 		38
B 39.8
(2.1)
P 		42.9
(3)
P 		23.3
(-2.6)
P 		22
(-3)
P 		21
C 34.8
(1)
P 		35.1
(1.1)
P 		40.4
(3)
P 		23.9
(-3)
P 		17
avr 43.9
(3) 		34.9
(0.6) 		35.8
(0.8) 		21.6
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 221
1 2 3 4 5 6 range
A 17.8
(-3)
P 		47.6
(-1.6)
P 		30.2
(-2.4)
P 		47.1
(-1.6)
P 		106.3
(1.2)
P 		144.8
(3)
P 		127
B 37.6
(-2.8)
P 		53.2
(-2.4)
P 		31.8
(-3)
P 		41.5
(-2.7)
P 		157.8
(0.6)
P 		239
(3)
P 		207
C 56.4
(-1.9)
P 		41.2
(-2.4)
P 		25.5
(-3)
P 		34.9
(-2.7)
P 		120.5
(0.4)
P 		194.1
(3)
P 		169
avr 37.3
(-2.7) 		47.3
(-2.3) 		29.2
(-3) 		41.2
(-2.6) 		128.2
(0.6) 		192.6
(3) 		163
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192759_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14593
Sequence Type Exemplar sequence
Representative Public ID ZC302.2 NCBI
Target Description ZC302.2 /REP_DB=WormBase Gene ID /WP=CE06574 /TR=SW:Q23256 /GB=CAA98293.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=guanine nucleotide binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029128(11), NR_002408(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029128 NCBI Caenorhabditis elegans ZC302.2a (ZC302.2) mRNA, complete cds. 11/11 None
NR_002408 NCBI Caenorhabditis elegans ZC302.2, miscRNA. 11/11 None
SNAP00000024767 ENSEMBL cdna:SNAP chromosome:CEL140:V:10739703:10741696:1 11/11 None
GENEFINDER00000024769 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10739703:10741696:1 11/11 None
ZC302.2 ENSEMBL cdna:known chromosome:CEL140:V:10739701:10741929:1 gene:ZC302.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10739702-10741696(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZC302.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98293 Hypothetical protein ZC302.2a [Caenorhabditis elegans] ref|NP_001024299.1| ZC302.2a [Caenorhabditis elegans] sp|Q23256|YH92_CAEEL Hypothetical WD-repeat protein ZC302.2 in chromosome V 0.0
blast CAE64482 Hypothetical protein CBG09206 [Caenorhabditis briggsae] 1.0E-115
blast CAA85487 Hypothetical protein C14B1.4 [Caenorhabditis elegans] ref|NP_497749.1| C14B1.4 [Caenorhabditis elegans] sp|Q17963|YKY4_CAEEL Hypothetical WD-repeat protein C14B1.4 in chromosome III 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 7.0E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.5E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.2E-13
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.8E-12
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.0E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0058
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 7.0E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.5E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.2E-13
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.8E-12
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.0E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0058
Sequence
Target Sequence 
>C. ELEGANS:192759_AT
ctaattatgtcttctgctgcagtttcaaccctcaatcatcattgatcgcatctgctggat
ttgatgaaacagttcgtgtttgggatttcaaaactggactctgtgttaaatgtattcctg
ctcattcggatccaattacatctatatcgtacaatcacgatggaaatacaatggctactt
catcatatgatggatgtattcgtgtatgggatgcagctagtggttcctgtctaaagacac
ttgtcgatacagatcatgcccccgttacttttgtatgcttctcaccaaatggaaaatatt
tgctatcggcgcaacttgacagcagtctcaagctatgggatccaaaaaaggcgaaaccat
tgaaatattacaacggtcataaaaacaaaaaatattgcctttttgcaaacatgtcggtcc
cacttggaaagcatatcatcagtggttctgaagatggacgtatacttgtatggagtattc
aaacaaaacaaatcgtacaaatattggaaggtcatactactcccgttttggcaacggatt
ctcatccaacactcaacatcattgcttctggtggactagagcccgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTAATTATGTCTTCTGCTGCAGTTT 698 225 902 Antisense
CAGTTTCAACCCTCAATCATCATTG 593 203 921 Antisense
ATGTATTCCTGCTCATTCGGATCCA 617 47 1011 Antisense
GATGCAGCTAGTGGTTCCTGTCTAA 486 411 1111 Antisense
GTTACTTTTGTATGCTTCTCACCAA 255 447 1165 Antisense
TCGGCGCAACTTGACAGCAGTCTCA 475 607 1207 Antisense
GCAGTCTCAAGCTATGGGATCCAAA 56 313 1223 Antisense
GCCTTTTTGCAAACATGTCGGTCCC 31 281 1298 Antisense
TTGGAAGGTCATACTACTCCCGTTT 483 707 1405 Antisense
AACACTCAACATCATTGCTTCTGGT 121 135 1449 Antisense
TGCTTCTGGTGGACTAGAGCCCGAC 487 557 1464 Antisense
Sequence Source Affymetrix Proprietary Database