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[192756_s_at]

Description K11H3.1 /REP_DB=WormBase Gene ID /WP=CE00505 /TR=SW:P34517 /GB=CAA80176.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Glycerol-3-phosphate dehydrogenase
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 83      4grp_highest_8_8 > 22      4grp_high_8_8 > 15      6grp_highest_nonorm > 37      6grp_total > 74      4grp_total > 01      6grp_highest_sub > 04      6grp_high1_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5527
1 2 3 4 range
A 2208.6
(-3)
P 		2204
(-3)
P 		2779.5
(-2.4)
P 		7580.3
(3)
P 		5376
B 2116.9
(-3)
P 		2310.2
(-2.8)
P 		2684.4
(-2.3)
P 		7084.6
(3)
P 		4968
C 2120
(-2.9)
P 		2053.1
(-3)
P 		3030
(-1.6)
P 		6309.3
(3)
P 		4256
avr 2148.5
(-3) 		2189.1
(-2.9) 		2831.3
(-2.2) 		6991.4
(3) 		4843

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1406
1 2 3 4 5 6 range
A 4740.6
(0.2)
P 		4007.2
(-3)
P 		5390.2
(3)
P 		5194.9
(2.2)
P 		5038.4
(1.5)
P 		4952.8
(1.1)
P 		1383
B 4894
(-0.2)
P 		4430
(-3)
P 		5028.6
(0.7)
P 		5413.4
(3)
P 		5072.5
(0.9)
P 		5135.8
(1.3)
P 		983
C 4876.2
(0.5)
P 		4459.4
(-3)
P 		5178.4
(3)
P 		5130.3
(2.6)
P 		5019
(1.7)
P 		4753.4
(-0.5)
P 		719
avr 4836.9
(0.4) 		4298.9
(-3) 		5199.1
(2.7) 		5246.2
(3) 		5043.3
(1.7) 		4947.3
(1.1) 		947
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1031
1 2 3 4 range
A 804.1
(0.1)
P 		478.4
(-3)
P 		726.6
(-0.6)
P 		1109.6
(3)
P 		631
B 675.1
(-2.3)
P 		570.6
(-3)
P 		622
(-2.7)
P 		1509.7
(3)
P 		939
C 701.8
(-1.6)
P 		590.3
(-3)
P 		1056.1
(2.9)
P 		1063.8
(3)
P 		474
avr 727
(-1.4) 		546.4
(-3) 		801.6
(-0.8) 		1227.7
(3) 		681

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1187
1 2 3 4 5 6 range
A 873.9
(-3)
P 		1425.2
(2.1)
P 		1173.9
(-0.2)
P 		1317.6
(1.1)
P 		1520.4
(3)
P 		1205.9
(0.1)
P 		647
B 1702.9
(0.4)
P 		1474.6
(-1.2)
P 		1221.1
(-3)
P 		1433.8
(-1.5)
P 		2060.9
(3)
P 		1915.1
(2)
P 		840
C 1807.4
(3)
P 		1360.7
(-0.5)
P 		1318
(-0.8)
P 		1031.7
(-3)
P 		1624.1
(1.6)
P 		1591.2
(1.3)
P 		776
avr 1461.4
(-0.3) 		1420.2
(-0.8) 		1237.7
(-3) 		1261
(-2.7) 		1735.1
(3) 		1570.7
(1) 		497
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192756_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6098
Sequence Type Exemplar sequence
Representative Public ID K11H3.1 NCBI
Target Description K11H3.1 /REP_DB=WormBase Gene ID /WP=CE00505 /TR=SW:P34517 /GB=CAA80176.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Glycerol-3-phosphate dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_181903(11), NM_066787(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_181903 NCBI Caenorhabditis elegans K11H3.1b (K11H3.1) mRNA, complete cds. 11/11 A 
NM_066787 NCBI Caenorhabditis elegans K11H3.1a (K11H3.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000008467 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9854198:9860012:-1 11/11 None
SNAP00000008462 ENSEMBL cdna:SNAP chromosome:CEL140:III:9854822:9856922:-1 11/11 None
K11H3.1b.1 ENSEMBL cdna:known chromosome:CEL140:III:9853713:9858398:-1 gene:K11H3.1 11/11 A 
K11H3.1b.2 ENSEMBL cdna:known chromosome:CEL140:III:9853988:9858398:-1 gene:K11H3.1 11/11 A 
K11H3.1a ENSEMBL cdna:known chromosome:CEL140:III:9854198:9859076:-1 gene:K11H3.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9854193-9856918(-) 100.0 100.0
Public Domain and Genome References
Ensembl K11H3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD54146 Hypothetical protein K11H3.1b [Caenorhabditis elegans] ref|NP_871632.1| K11H3.1b [Caenorhabditis elegans] sp|P34517|GPDA_CAEEL Probable glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic 0.0
blast CAA80176 Hypothetical protein K11H3.1a [Caenorhabditis elegans] ref|NP_499188.2| K11H3.1a [Caenorhabditis elegans] 0.0
blast CAE65098 Hypothetical protein CBG09958 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006168 EMBL-EBI NAD-dependent glycerol-3-phosphate dehydrogenase 1.0E-126
Pfam IPR006168 EMBL-EBI NAD-dependent glycerol-3-phosphate dehydrogenase 1.0E-126
Pfam IPR006168 EMBL-EBI NAD-dependent glycerol-3-phosphate dehydrogenase 1.0E-126
Pfam IPR006168 EMBL-EBI NAD-dependent glycerol-3-phosphate dehydrogenase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192756_S_AT
atttctgtgaagctaccatcggatgtaagaggaaagctgaagatggaccacttctcaaga
agctcttccatactgataacttccgaatcaatgttgttgaagatgcacatactgttgaat
tgtgtggtgctctcaaaaacgtcgttgcttgtgctgctggatttactgatggtcttggtt
atggagataacacaaaggcagcagttattcgattgggtctcatggaaactaccaaattcg
ttgaacattactatccaggatcaaatcttcaaacattcttcgaatcatgtggaattgctg
atctcatcacaacttgctatggaggtcgtaatcgtaaggtgtgcgaggcgttcgtcaaaa
ctggtaaatcgatggctgaagttgagaaagaactgttgaatgggcaaagtgctcaaggac
cattgacagctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCTGTGAAGCTACCATCGGATG 258 17 497 Antisense
GATGGACCACTTCTCAAGAAGCTCT 61 407 538 Antisense
AGCTCTTCCATACTGATAACTTCCG 636 79 557 Antisense
TACTGTTGAATTGTGTGGTGCTCTC 524 645 606 Antisense
AAAAACGTCGTTGCTTGTGCTGCTG 567 129 631 Antisense
GTGCTGCTGGATTTACTGATGGTCT 36 479 647 Antisense
GGCAGCAGTTATTCGATTGGGTCTC 101 531 693 Antisense
ATTCGTTGAACATTACTATCCAGGA 537 7 732 Antisense
GCTGATCTCATCACAACTTGCTATG 547 295 793 Antisense
GGTGTGCGAGGCGTTCGTCAAAACT 639 499 834 Antisense
AGTGCTCAAGGACCATTGACAGCTG 591 59 904 Antisense
Sequence Source Affymetrix Proprietary Database