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Cluster Members Consensus/Exemplar |
GeneChip Array Information |
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192750_at |
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C. elegans Genome Array |
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Nematode |
Probe Design Information |
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affy.Ce.9191
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Exemplar sequence
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F38H4.9 NCBI
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F38H4.9 /REP_DB=WormBase Gene ID /WP=CE10074 /TR=Q27498 /GB=CAB01174.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
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This cluster is supported by a Sanger Annotation. |
Annotation Method Description |
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This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s). |
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This is a grade A annotation. |
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NM_069846(11) |
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NM_069846 NCBI |
Caenorhabditis elegans LEThal family member (let-92) (let-92) mRNA, complete cds. |
11/11 |
None |
SNAP00000007683 ENSEMBL |
cdna:SNAP chromosome:CEL140:IV:11858416:11859674:1 |
11/11 |
None |
GENEFINDER00000007685 ENSEMBL |
cdna:GeneFinder chromosome:CEL140:IV:11858416:11859674:1 |
11/11 |
None |
F38H4.9.2 ENSEMBL |
cdna:known chromosome:CEL140:IV:11858402:11860430:1 gene:F38H4.9 |
11/11 |
None |
F38H4.9.1 ENSEMBL |
cdna:known chromosome:CEL140:IV:11858410:11860430:1 gene:F38H4.9 |
11/11 |
None | |
There are no noteworthy cross hybridizing mRNAs found for this probe set. | |
Genomic Alignment of Consensus/Exemplar Sequence |
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Wormbase March 2004 |
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chrIV:11858421-11859680(+) |
100.0 |
100.0 |
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Public Domain and Genome References |
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serine/threonine protein phosphatase
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let-92
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F38H4.9
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178117 Entrez gene
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Q27498 EMBL-EBI
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CE10074 Wormbase
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Functional Annotations |
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ATH1-121501:262909_AT |
serine/threonine protein phosphatase PP2A-2 catalytic subunit (PP2A2) |
at |
ATGENOME1:16576_F_AT |
serine/threonine protein phosphatase PP2A-2 catalytic subunit (PP2A2) |
at |
CANINE:1604369_AT |
similar to Serine/threonine protein phosphatase 2A, catalytic subunit, beta isoform (PP2A-beta) |
cfa |
CANINE:1597003_AT |
similar to Serine/threonine protein phosphatase 2A, catalytic subunit, beta isoform (PP2A-beta) |
cfa |
CANINE:1586503_AT |
similar to Serine/threonine protein phosphatase 2A, catalytic subunit, beta isoform (PP2A-beta) |
cfa |
CANINE_2:CFA.8858.1.A1_S_AT |
similar to Serine/threonine protein phosphatase 2A, catalytic subunit, beta isoform (PP2A-beta) |
cfa |
CANINE_2:CFAAFFX.10646.1.S1_S_AT |
similar to Serine/threonine protein phosphatase 2A, catalytic subunit, beta isoform (PP2A-beta) |
cfa |
DROSOPHILA_2:1640841_AT |
microtubule star |
dm |
DROSGENOME1:154353_AT |
microtubule star |
dm |
CHICKEN:GGA.4287.1.S1_AT |
protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform |
gga |
HG-U133A:201374_X_AT |
protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform |
hs |
HG-U133A_2:201374_X_AT |
protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform |
hs |
HG-U133_PLUS_2:201374_X_AT |
protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform |
hs |
HG-U133A:201375_S_AT |
protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform |
hs |
HG-U133_PLUS_2:201375_S_AT |
protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform |
hs |
HG-FOCUS:201375_S_AT |
protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform |
hs |
HG-U133A_2:201375_S_AT |
protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform |
hs |
HG-U95AV2:924_S_AT |
protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform |
hs |
HC-G110:924_S_AT |
protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform |
hs |
U133_X3P:201374_3P_X_AT |
protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform |
hs |
HUGENEFL:J03805_S_AT |
protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform |
hs |
U133_X3P:G4758951_3P_A_AT |
protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform |
hs |
U133_X3P:HS.80350.0.S1_3P_X_AT |
protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform |
hs |
U133_X3P:HS.80350.0.S1_3P_AT |
protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform |
hs |
HG-U95B:50550_AT |
Protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform |
hs |
HU35KSUBD:RC_N68423_AT |
Protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform |
hs |
MU11KSUBB:Z67746_S_AT |
protein phosphatase 2a, catalytic subunit, beta isoform |
mm |
MU11KSUBB:MSA.26899.0_F_AT |
protein phosphatase 2a, catalytic subunit, beta isoform |
mm |
MU11KSUBB:MSA.24725.0_S_AT |
protein phosphatase 2a, catalytic subunit, beta isoform |
mm |
MG-U74AV2:101101_AT |
protein phosphatase 2a, catalytic subunit, beta isoform |
mm |
MOE430A:1421823_A_AT |
protein phosphatase 2a, catalytic subunit, beta isoform |
mm |
MOUSE430A_2:1421823_A_AT |
protein phosphatase 2a, catalytic subunit, beta isoform |
mm |
MOUSE430_2:1421823_A_AT |
protein phosphatase 2a, catalytic subunit, beta isoform |
mm |
MOE430A:1421822_AT |
protein phosphatase 2a, catalytic subunit, beta isoform |
mm |
MOUSE430A_2:1421822_AT |
protein phosphatase 2a, catalytic subunit, beta isoform |
mm |
MOUSE430_2:1421822_AT |
protein phosphatase 2a, catalytic subunit, beta isoform |
mm |
MOUSE430_2:1431341_AT |
Protein phosphatase 2a, catalytic subunit, beta isoform, mRNA (cDNA clone MGC:29430 IMAGE:3674696) |
mm |
MOE430B:1431341_AT |
Protein phosphatase 2a, catalytic subunit, beta isoform, mRNA (cDNA clone MGC:29430 IMAGE:3674696) |
mm |
MG-U74CV2:135325_AT |
Protein phosphatase 2a, catalytic subunit, beta isoform, mRNA (cDNA clone MGC:29430 IMAGE:3674696) |
mm |
MU11KSUBB:MSA.26899.0_I_AT |
Protein phosphatase 2a, catalytic subunit, beta isoform, mRNA (cDNA clone MGC:29430 IMAGE:3674696) |
mm |
MU11KSUBB:MSA.26899.0_R_AT |
Protein phosphatase 2a, catalytic subunit, beta isoform, mRNA (cDNA clone MGC:29430 IMAGE:3674696) |
mm |
MU19KSUBB:TC33144_AT |
Protein phosphatase 2a, catalytic subunit, beta isoform, mRNA (cDNA clone MGC:29430 IMAGE:3674696) |
mm |
RG-U34A:M23591MRNA#2_AT |
protein phosphatase 2a, catalytic subunit, beta isoform |
rn |
RG-U34A:X16044CDS_S_AT |
protein phosphatase 2a, catalytic subunit, beta isoform |
rn |
RAE230A:1367827_AT |
protein phosphatase 2a, catalytic subunit, beta isoform |
rn |
RAT230_2:1367827_AT |
protein phosphatase 2a, catalytic subunit, beta isoform |
rn |
YEAST_2:1779633_AT |
Catalytic subunit of protein phosphatase 2A, functionally redundant with Pph21p; methylated at C terminus; forms alternate complexes with several regulatory subunits; involved in signal transduction and regulation of mitosis |
Sc | |
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16787 |
hydrolase activity |
inferred from electronic annotation |
QuickGO AmiGO | |
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blast |
CAB01174 |
Hypothetical protein F38H4.9 [Caenorhabditis elegans] ref|NP_502247.1| LEThal family member (let-92) [Caenorhabditis elegans] emb|CAE62135.1| Hypothetical protein CBG06179 [Caenorhabditis briggsae] |
0.0 |
blast |
AAH64168 |
Protein phosphatase 2A, catalytic subunit, beta isoform [Xenopus tropicalis] ref|NP_989274.1| protein phosphatase 2A, catalytic subunit, beta isoform [Xenopus tropicalis] |
1.0E-171 |
blast |
NP_059070 |
protein phosphatase 2a, catalytic subunit, beta isoform [Mus musculus] ref|NP_001009552.1| protein phosphatase 2, catalytic subunit, beta isoform [Homo sapiens] ref|NP_004147.1| protein phosphatase 2, catalytic subunit, beta isoform [Homo sapiens] ref|NP_058736.1| protein phosphatase 2a, catalytic subunit, beta isoform [Rattus norvegicus] gb|AAH85926.1| Protein phosphatase 2a, catalytic subunit, beta isoform [Rattus norvegicus] gb|AAH58582.1| Protein phosphatase 2a, catalytic subunit, beta isoform [Mus musculus] ref|XP_539988.1| PREDICTED: similar to Serine/threonine protein phosphatase 2A, catalytic subunit, beta isoform (PP2A-beta) isoform 1 [Canis familiaris] emb|CAA32249.1| unnamed protein product [Rattus norvegicus] emb|CAG46547.1| PPP2CB [Homo sapiens] emb|CAA34167.1| unnamed protein product [Rattus rattus] sp|P62716|P2AB_RAT Serine/threonine protein phosphatase 2A, catalytic subunit, beta isoform (PP2A-beta) sp|P62715|P2AB_MOUSE Serine/threonine protein phosphatase 2A, catalytic subunit, beta isoform (PP2A-beta) sp|P62714|P2AB_HUMAN Serine/threonine protein phosphatase 2A, catalytic subunit, beta isoform (PP2A-beta) emb|CAA91559.1| phosphatase 2A catalytic subunit isotype beta [Mus musculus] emb|CAA31183.1| unnamed protein product [Homo sapiens] gb|AAA41912.1| protein phosphatase 2A-beta catalytic subunit gb|AAA36467.1| protein phosphatase-2A catalytic subunit-beta gb|AAH12022.1| Protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform [Homo sapiens] |
1.0E-170 | |
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Pfam |
IPR004843 EMBL-EBI |
Metallo-phosphoesterase |
1.2E-39 |
Pfam |
IPR004843 EMBL-EBI |
Metallo-phosphoesterase |
3.7E-35 | |
Sequence |
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>C. ELEGANS:192750_AT
aaatcactcaggtctacgggttctatgacgagtgtttgaggaaatatggaaactcgaatg
tgtggaagtacttcactgatctcttcgactgtttcccacttaccgctcttgttgatggtc
aaatcttctgccttcacggaggtctttcaccgtctattgatactcttgatcacatcagag
ctcttgaccgcattcaagaggttccacacgaaggaccaatgtgcgatcttctctggtctg
atccagatgacagaggtggctggggaatctctccacgtggagcaggatacacattcggtc
aggatatctcggagacgttcaaccattccaatggacttactctaatttctcgggcccatc
aacttgtcatggagggatacaactggagtcacgatcgtaacgtggtaacagtgttctcag
caccaaactactgctatcgttgtggaaatcaggcagcgatggtggagctggacgacgatc
tcaaatattcgttcttgcaattcgaccctg
BLASTn GenBank NR |
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AAATCACTCAGGTCTACGGGTTCTA |
11 |
115 |
404 |
Antisense |
GAAGTACTTCACTGATCTCTTCGAC |
315 |
337 |
468 |
Antisense |
CCACTTACCGCTCTTGTTGATGGTC |
578 |
271 |
499 |
Antisense |
TGATGGTCAAATCTTCTGCCTTCAC |
252 |
567 |
516 |
Antisense |
GGTCTTTCACCGTCTATTGATACTC |
199 |
503 |
544 |
Antisense |
AAGGACCAATGTGCGATCTTCTCTG |
368 |
161 |
614 |
Antisense |
GGAGCAGGATACACATTCGGTCAGG |
209 |
521 |
682 |
Antisense |
ATCTCGGAGACGTTCAACCATTCCA |
595 |
31 |
709 |
Antisense |
TCGGGCCCATCAACTTGTCATGGAG |
453 |
605 |
753 |
Antisense |
ACAGTGTTCTCAGCACCAAACTACT |
551 |
107 |
811 |
Antisense |
TATTCGTTCTTGCAATTCGACCCTG |
237 |
663 |
889 |
Antisense | |
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Affymetrix Proprietary Database | |