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[192749_at]

Description C02F4.2 /REP_DB=WormBase Gene ID /WP=CE07853 /TR=Q95002 /GB=CAB02719.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 60      6grp_total > 06      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 320
1 2 3 4 range
A 598.1
(3)
P 		404.2
(-1.3)
P 		329.3
(-3)
P 		462.3
(-0)
P 		269
B 619.4
(3)
P 		327.4
(-2.5)
P 		379.1
(-1.5)
P 		299.7
(-3)
P 		320
C 604.9
(3)
P 		454.7
(-0)
P 		304.9
(-3)
P 		327.1
(-2.6)
P 		300
avr 607.5
(3) 		395.4
(-1.7) 		337.8
(-3) 		363
(-2.4) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 790
1 2 3 4 5 6 range
A 628.5
(3)
P 		546.7
(1.6)
P 		338.9
(-1.9)
P 		363.9
(-1.5)
P 		288.5
(-2.7)
P 		272.4
(-3)
P 		356
B 520.5
(3)
P 		516.2
(2.9)
P 		398.1
(0.5)
P 		347.5
(-0.6)
P 		263.1
(-2.3)
P 		228.2
(-3)
P 		292
C 1002.4
(3)
P 		564.6
(-0.3)
P 		384.6
(-1.7)
P 		286
(-2.4)
P 		297.4
(-2.4)
P 		212.4
(-3)
P 		790
avr 717.1
(3) 		542.5
(0.8) 		373.9
(-1.3) 		332.5
(-1.8) 		283
(-2.4) 		237.7
(-3) 		479
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 217.8
(3)
P 		87.7
(-2.2)
P 		86.1
(-2.3)
P 		67.7
(-3)
P 		150
B 197.5
(3)
P 		80.9
(-2.2)
P 		87.8
(-1.9)
P 		63.9
(-3)
P 		134
C 200.2
(3)
P 		130.7
(0.1)
P 		106.3
(-0.9)
P 		55.2
(-3)
P 		145
avr 205.2
(3) 		99.8
(-1.4) 		93.4
(-1.7) 		62.3
(-3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 314
1 2 3 4 5 6 range
A 115.9
(-0.7)
P 		194.4
(3)
P 		73.8
(-2.6)
P 		92.3
(-1.8)
P 		87.1
(-2)
P 		66.3
(-3)
P 		128
B 181.1
(3)
P 		171.8
(2.4)
P 		96.7
(-2.3)
P 		92
(-2.6)
P 		106.9
(-1.6)
P 		85.1
(-3)
P 		96
C 371.5
(3)
P 		172.3
(-0.8)
P 		97.9
(-2.2)
P 		57.5
(-3)
P 		96.2
(-2.3)
P 		71.1
(-2.7)
P 		314
avr 222.8
(3) 		179.5
(1.3) 		89.5
(-2.4) 		80.6
(-2.7) 		96.7
(-2.1) 		74.2
(-3) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192749_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9636
Sequence Type Exemplar sequence
Representative Public ID C02F4.2 NCBI
Target Description C02F4.2 /REP_DB=WormBase Gene ID /WP=CE07853 /TR=Q95002 /GB=CAB02719.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026122(11), NM_001026121(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026122 NCBI Caenorhabditis elegans abnormal CHEmotaxis family member (tax-6) (tax-6) mRNA, complete cds. 11/11 None
NM_001026121 NCBI Caenorhabditis elegans abnormal CHEmotaxis family member (tax-6) (tax-6) mRNA, complete cds. 11/11 None
GENEFINDER00000033618 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10493834:10501032:-1 11/11 None
C02F4.2b ENSEMBL cdna:known chromosome:CEL140:IV:10492871:10501556:-1 gene:C02F4.2 11/11 None
C02F4.2a ENSEMBL cdna:known chromosome:CEL140:IV:10493834:10501032:-1 gene:C02F4.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033613 5/11 Cross Hyb Matching Probes None
SNAP00000033614 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10493839-10501038(-) 100.0 100.0
Public Domain and Genome References
Ensembl C02F4.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD88213 Hypothetical protein C02F4.2b [Caenorhabditis elegans] ref|NP_001021293.1| abnormal CHEmotaxis family member (tax-6) [Caenorhabditis elegans] 0.0
blast CAB02719 Hypothetical protein C02F4.2a [Caenorhabditis elegans] ref|NP_001021292.1| abnormal CHEmotaxis family member (tax-6) [Caenorhabditis elegans] 0.0
blast CAE63812 Hypothetical protein CBG08362 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 8.4E-35
Sequence
Target Sequence 
>C. ELEGANS:192749_AT
acaaagctgccatcctgaagtacgagaacaatgtgatgaatattcgtcaattcaactgca
gtcctcatccatattggctgccgaactttatggatgtgttcacgtggtcattgccgtttg
tgggagaaaaagtaacggagatgctggttcacattctcaacatttgttctgacgacgagc
tgatggctgaatgcgatgacacctttgaaggtggagtggggtctgcaagaaaagaggtta
ttcgacacaagattcgagcaattggaaagatggcaagagcattctcagttcttcgcgagg
agagcgaaagtgttctcgcactgaaaggacttacaccaaccggtgcacttccaatgggaa
cacttcaaggtggatcacgtggtgtccgagaagtggcagcagaatccggatgcgattcgg
gacatcttattcaatcattcgaagaagctcgccgtctcgataagattaatgaaagaatgc
caccaacaatggcaacaccaccagcacaatcaccaagtcaatcaccaattccgtcacgac
aaacgacacctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAAGCTGCCATCCTGAAGTACGA 398 111 1037 Antisense
ATTCGTCAATTCAACTGCAGTCCTC 2 11 1078 Antisense
GCAGTCCTCATCCATATTGGCTGCC 66 313 1094 Antisense
GATGTGTTCACGTGGTCATTGCCGT 108 409 1129 Antisense
GATGCTGGTTCACATTCTCAACATT 109 415 1176 Antisense
GGCTGAATGCGATGACACCTTTGAA 145 539 1221 Antisense
GCAAGAGCATTCTCAGTTCTTCGCG 122 321 1309 Antisense
TTACACCAACCGGTGCACTTCCAAT 293 681 1367 Antisense
AAGGTGGATCACGTGGTGTCCGAGA 702 159 1403 Antisense
AGAAGCTCGCCGTCTCGATAAGATT 551 73 1479 Antisense
ATTCCGTCACGACAAACGACACCTC 688 5 1564 Antisense
Sequence Source Affymetrix Proprietary Database