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[192748_s_at] Zinc finger, C4 type (two domains) /// Zinc finger, C4 type (two domains)

Description ZK1025.10 /REP_DB=WormBase Gene ID /WP=CE19336 /TR=Q9XXL7 /GB=CAA18369.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster 6grp_total > 23      4grp_total > 50      6grp_cgc > 20      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 849
1 2 3 4 range
A 146.2
(-2.3)
P 		853.8
(3)
P 		591.4
(1)
P 		54.5
(-3)
A 		799
B 112.6
(-2.2)
P 		810.8
(3)
P 		641.7
(1.7)
P 		9.2
(-3)
A 		802
C 4.4
(-3)
A 		769.2
(3)
P 		598.7
(1.7)
P 		59.8
(-2.6)
A 		765
avr 87.7
(-2.6) 		811.3
(3) 		610.6
(1.4) 		41.2
(-3) 		770

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 391
1 2 3 4 5 6 range
A 400.1
(3)
P 		160.2
(-0.9)
P 		190.8
(-0.4)
P 		139.5
(-1.2)
P 		83.5
(-2.1)
P 		26.5
(-3)
A 		374
B 275.7
(3)
P 		104.5
(-0.9)
P 		190.7
(1.1)
P 		180.4
(0.9)
P 		65.8
(-1.7)
P 		9.2
(-3)
A 		267
C 226.8
(3)
P 		198.3
(2.2)
P 		203.5
(2.3)
P 		226.1
(3)
P 		71.2
(-1.6)
A 		22
(-3)
A 		205
avr 300.9
(3) 		154.3
(-0.1) 		195
(0.7) 		182
(0.5) 		73.5
(-1.8) 		19.2
(-3) 		282
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 53.2
(-1.5)
P 		185.3
(3)
P 		154.6
(2)
P 		8
(-3)
A 		177
B 35.9
(-2)
P 		200.3
(3)
P 		148.7
(1.4)
P 		2
(-3)
A 		198
C 1.4
(-3)
A 		221.2
(3)
P 		208.7
(2.7)
P 		10.1
(-2.8)
A 		220
avr 30.2
(-2.3) 		202.3
(3) 		170.7
(2) 		6.7
(-3) 		196

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 73.7
(3)
P 		57
(1.5)
P 		41.6
(0.1)
P 		35.4
(-0.4)
P 		25.2
(-1.3)
P 		6.5
(-3)
A 		67
B 95.9
(3)
P 		34.8
(-1)
P 		46.3
(-0.2)
P 		47.8
(-0.1)
P 		26.7
(-1.5)
P 		3.4
(-3)
A 		93
C 84.1
(3)
P 		60.5
(1.2)
P 		51.8
(0.5)
P 		45.5
(-0)
P 		23.1
(-1.8)
A 		7.4
(-3)
A 		77
avr 84.6
(3) 		50.8
(0.4) 		46.6
(0.1) 		42.9
(-0.2) 		25
(-1.5) 		5.8
(-3) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192748_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2023
Sequence Type Exemplar sequence
Representative Public ID ZK1025.10 NCBI
Target Description ZK1025.10 /REP_DB=WormBase Gene ID /WP=CE19336 /TR=Q9XXL7 /GB=CAA18369.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060520(11), NM_060531(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060520 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-73) (nhr-73) mRNA, complete cds. 11/11 None
NM_060531 NCBI Caenorhabditis elegans ZK1025.10 (ZK1025.10) mRNA, complete cds. 11/11 None
GENEFINDER00000039070 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11441243:11443995:-1 11/11 None
SNAP00000039063 ENSEMBL cdna:SNAP chromosome:CEL140:I:11442209:11443995:-1 11/11 None
SNAP00000038823 ENSEMBL cdna:SNAP chromosome:CEL140:I:11485921:11488108:1 11/11 None
GENEFINDER00000038830 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11486011:11488420:1 11/11 None
C27C7.4 ENSEMBL cdna:known chromosome:CEL140:I:11442166:11443995:-1 gene:C27C7.4 11/11 None
ZK1025.10 ENSEMBL cdna:known chromosome:CEL140:I:11486011:11488069:1 gene:ZK1025.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11485941-11488000(+) 100.0 100.0
chrI:11442139-11443926(-) 99.8 99.8
Public Domain and Genome References
Gene Title Zinc finger, C4 type (two domains)
Zinc finger, C4 type (two domains)
Gene Symbol nhr-73
nhr-245
Ensembl C27C7.4
ZK1025.10
Entrez Gene 191496 Entrez gene
191722 Entrez gene
SwissProt Q9XVC8 EMBL-EBI
WormBase CE18535 Wormbase
CE19336 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03927 Hypothetical protein C27C7.4 [Caenorhabditis elegans] ref|NP_492921.1| Nuclear Hormone Receptor family member (nhr-73) [Caenorhabditis elegans] 0.0
blast CAA18369 Hypothetical protein ZK1025.10 [Caenorhabditis elegans] ref|NP_492932.1| ZK1025.10 [Caenorhabditis elegans] 0.0
blast CAA18369 Hypothetical protein ZK1025.10 [Caenorhabditis elegans] ref|NP_492932.1| ZK1025.10 [Caenorhabditis elegans] 1.0E-177
blast CAB03927 Hypothetical protein C27C7.4 [Caenorhabditis elegans] ref|NP_492921.1| Nuclear Hormone Receptor family member (nhr-73) [Caenorhabditis elegans] 1.0E-177
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.4E-9
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 9.2E-9
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.4E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.4E-6
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.3E-8
Sequence
Target Sequence 
>C. ELEGANS:192748_S_AT
gaacgctctccaagtgaagtcagtgaacgatcttatgattgtcaccgcctaccaagaagg
aacatccctggaatcgtgcttcaactgccctggagtagatatactgtataatgaagacgt
tgaggttgtgcacaagtacttcaagttctcgaacacctggattgattcactccttgcacc
tacttccccactggatcctagctgtaacgaaagaatctctgagttcatccatctactcaa
gtcaactctggggagcacacttgcccagcttaacctgaacatcattgaatacgcagcctt
caagtcatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGCTCTCCAAGTGAAGTCAGTG 395 347 453 Antisense
ACGATCTTATGATTGTCACCGCCTA 77 95 479 Antisense
GGAACATCCCTGGAATCGTGCTTCA 439 529 511 Antisense
TGCTTCAACTGCCCTGGAGTAGATA 24 579 529 Antisense
ACACCTGGATTGATTCACTCCTTGC 420 109 605 Antisense
CCCACTGGATCCTAGCTGTAACGAA 300 257 639 Antisense
GAATCTCTGAGTTCATCCATCTACT 358 329 665 Antisense
CATCCATCTACTCAAGTCAACTCTG 275 211 678 Antisense
TCAACTCTGGGGAGCACACTTGCCC 353 629 694 Antisense
CACTTGCCCAGCTTAACCTGAACAT 65 197 710 Antisense
GAATACGCAGCCTTCAAGTCATTTT 294 327 739 Antisense
Sequence Source Affymetrix Proprietary Database