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[192745_at] testis-specific protein TPX-1 like

Description F49E11.11 /REP_DB=WormBase Gene ID /WP=CE05907 /TR=Q18549 /GB=CAA94354.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 44      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 82      6grp_total > 0      4grp_total > 45      6grp_total_sub > Hat      6grp_high1_sub > 02      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2379
1 2 3 4 range
A 2268.2
(3)
P 		1754.7
(1.5)
P 		771.5
(-1.3)
P 		157.7
(-3)
P 		2111
B 2201.7
(3)
P 		1563
(1.1)
P 		848
(-1)
P 		173.4
(-3)
P 		2028
C 2537
(3)
P 		1565.2
(0.5)
P 		681.7
(-1.8)
P 		229.4
(-3)
P 		2308
avr 2335.6
(3) 		1627.6
(1) 		767.1
(-1.4) 		186.8
(-3) 		2149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 430.7
(-0.1)
P 		571.3
(3)
P 		295.7
(-3)
P 		391.5
(-0.9)
P 		327.7
(-2.3)
P 		440.2
(0.1)
P 		276
B 313.1
(-1.8)
P 		381.3
(0.7)
P 		442.7
(3)
P 		279
(-3)
P 		332.1
(-1.1)
P 		395.2
(1.3)
P 		164
C 286
(-3)
P 		458.7
(3)
P 		433.7
(2.1)
P 		324.4
(-1.7)
P 		371.2
(-0)
P 		431
(2)
P 		173
avr 343.3
(-2.5) 		470.4
(3) 		390.7
(-0.4) 		331.6
(-3) 		343.7
(-2.5) 		422.1
(0.9) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 817
1 2 3 4 range
A 825.9
(3)
P 		380.9
(-0.3)
P 		201.7
(-1.7)
P 		23.1
(-3)
P 		803
B 702.1
(3)
P 		386
(0.1)
P 		196.5
(-1.6)
P 		37
(-3)
P 		665
C 839.8
(3)
P 		450
(0.1)
P 		237.6
(-1.5)
P 		38.7
(-3)
P 		801
avr 789.3
(3) 		405.6
(-0) 		211.9
(-1.6) 		32.9
(-3) 		756

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 79.4
(-2.4)
P 		203.2
(3)
P 		64.4
(-3)
P 		99.3
(-1.5)
P 		98.9
(-1.5)
P 		107.2
(-1.1)
P 		139
B 108.9
(-0.1)
P 		126.9
(1.3)
P 		107.5
(-0.3)
P 		73.9
(-3)
P 		134.9
(2)
P 		147.4
(3)
P 		74
C 106
(0.1)
P 		140
(2.7)
P 		110.4
(0.4)
P 		65.2
(-3)
P 		120.1
(1.2)
P 		144.3
(3)
P 		79
avr 98.1
(-1.6) 		156.7
(3) 		94.1
(-1.9) 		79.5
(-3) 		118
(-0) 		133
(1.2) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192745_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8835
Sequence Type Exemplar sequence
Representative Public ID F49E11.11 NCBI
Target Description F49E11.11 /REP_DB=WormBase Gene ID /WP=CE05907 /TR=Q18549 /GB=CAA94354.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070103(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070103 NCBI Caenorhabditis elegans F49E11.11 (F49E11.11) mRNA, complete cds. 11/11 None
F49E11.11 ENSEMBL cdna:known chromosome:CEL140:IV:13059598:13060639:1 gene:F49E11.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13059603-13060578(+) 100.0 100.0
Public Domain and Genome References
Gene Title testis-specific protein TPX-1 like
Ensembl F49E11.11
Entrez Gene 178252 Entrez gene
SwissProt Q18549 EMBL-EBI
WormBase CE05907 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94341 Hypothetical protein F49E11.11 [Caenorhabditis elegans] emb|CAA94354.1| Hypothetical protein F49E11.11 [Caenorhabditis elegans] ref|NP_502504.1| F49E11.11 [Caenorhabditis elegans] 1.0E-123
blast CAE58675 Hypothetical protein CBG01849 [Caenorhabditis briggsae] 9.0E-94
blast CAE58674 Hypothetical protein CBG01847 [Caenorhabditis briggsae] 9.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 1.1E-60
Sequence
Target Sequence 
>C. ELEGANS:192745_AT
ttctcgttttggttacccttcagattggagcttatgctcaattcagagaaagcactcaac
aattcattgtggaccttcataataagcttcgtacttcaattgccaagggaacatatgtgg
ctaaagggacaacaaaagcagctggtagtaatcttttgaaaatgaagtgggacaccacat
tggccaccgctgctcaaacttttgctaacacttgcccgagaggtcactccaatgcagctg
gagttggagagaacttgtactggagatggtccagcctcccattctccggaatggatatct
atggaggagctgcatctgttgcctgggaacaagaattccagcagtacggatggacaacca
acactttcactcaagcccttgctaacactggaattggacatgctacccaaatggcttggg
ctaatactggtctgattggatgtggagtgaagaactgcggacctgatccagaacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCGTTTTGGTTACCCTTCAGAT 394 669 29 Antisense
ACCCTTCAGATTGGAGCTTATGCTC 13 91 43 Antisense
GAAGTGGGACACCACATTGGCCACC 213 335 192 Antisense
CACCGCTGCTCAAACTTTTGCTAAC 314 201 213 Antisense
TGCTAACACTTGCCCGAGAGGTCAC 682 577 231 Antisense
CAGCCTCCCATTCTCCGGAATGGAT 447 201 300 Antisense
ATGGAGGAGCTGCATCTGTTGCCTG 301 51 329 Antisense
GGATGGACAACCAACACTTTCACTC 462 515 376 Antisense
CTTTCACTCAAGCCCTTGCTAACAC 389 221 392 Antisense
TGGCTTGGGCTAATACTGGTCTGAT 190 545 440 Antisense
GAACTGCGGACCTGATCCAGAACTA 469 349 480 Antisense
Sequence Source Affymetrix Proprietary Database