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Cluster Members
Consensus/Exemplar

GeneChip Array Information

Probe Set ID

192744_at

GeneChip Array

C. elegans Genome Array

Organism Common Name

Nematode

Probe Design Information

Transcript ID(Array Design)

affy.Ce.534

Sequence Type

Exemplar sequence

Representative Public ID

C34B7.2 NCBI

Target Description

C34B7.2 /REP_DB=WormBase Gene ID /WP=CE08566 /TR=P90770 /GB=CAB05701.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Yeast hypothetical protein YNOD like

Cluster Evidence

This cluster is supported by a Sanger Annotation.

Annotation Method Description

Annotation Description

This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).

Annotation Grade

This is a grade A annotation.

Annotation Transcript Cluster (# of Matching Probes)

NM_059865(11)

Transcript Assignments

Representative Transcript	Description	Matching Probes	Related Probesets by Grade
NM_059865 NCBI	Caenorhabditis elegans C34B7.2 (C34B7.2) mRNA, complete cds.	11/11	None
SNAP00000044467 ENSEMBL	cdna:SNAP chromosome:CEL140:I:8338738:8349805:1	11/11	None
GENEFINDER00000044471 ENSEMBL	cdna:GeneFinder chromosome:CEL140:I:8345106:8349899:1	11/11	None
C34B7.2 ENSEMBL	cdna:known chromosome:CEL140:I:8345106:8349950:1 gene:C34B7.2	11/11	None

Annotation Notes

There are no noteworthy cross hybridizing mRNAs found for this probe set.

Genomic Alignment of Consensus/Exemplar Sequence

Assembly

Wormbase March 2004

Alignment(s)

Position	Identity	Coverage	Cytoband
chrI:8345036-8349736(+)	97.22	100.0

Public Domain and Genome References

Gene Title

Yeast hypothetical protein YNOD like

Ensembl

C34B7.2

Entrez Gene

172620 Entrez gene

SwissProt

P90770 EMBL-EBI

WormBase

CE32316 Wormbase

Functional Annotations

Ortholog

ID	Title	Organism
ATH1-121501:252737_AT	phosphoinositide phosphatase family protein	at
CANINE:1588136_AT	similar to SAC domain-containing protein 3	cfa
CANINE_2:CFA.8889.1.S1_AT	similar to SAC domain-containing protein 3	cfa
CANINE_2:CFA.8889.1.S1_S_AT	similar to SAC domain-containing protein 3	cfa
CANINE_2:CFAAFFX.6706.1.S1_AT	similar to SAC domain-containing protein 3	cfa
DROSOPHILA_2:1627938_AT		dm
DROSGENOME1:141201_AT		dm
CHICKEN:GGAAFFX.24595.1.S1_AT	similar to Protein KIAA0274	gga
HG-U133_PLUS_2:203656_AT	KIAA0274	hs
HG-U133A:203656_AT	KIAA0274	hs
HG-U133A_2:203656_AT	KIAA0274	hs
HUGENEFL:D87464_AT	KIAA0274	hs
U133_X3P:G7662033_3P_AT	KIAA0274	hs
HG-U95AV2:41101_AT	KIAA0274	hs
MOUSE430_2:1419577_AT	RIKEN cDNA A530089I17 gene	mm
MOUSE430A_2:1419577_AT	RIKEN cDNA A530089I17 gene	mm
MOE430A:1419577_AT	RIKEN cDNA A530089I17 gene	mm
MG-U74BV2:109418_AT	RIKEN cDNA A530089I17 gene	mm
MU19KSUBA:TC20219_AT	RIKEN cDNA A530089I17 gene, mRNA (cDNA clone MGC:36652 IMAGE:5363304)	mm
MU19KSUBC:TC35650_AT	RIKEN cDNA A530089I17 gene, mRNA (cDNA clone MGC:36652 IMAGE:5363304)	mm
MU19KSUBC:TC40653_AT	RIKEN cDNA A530089I17 gene, mRNA (cDNA clone MGC:36652 IMAGE:5363304)	mm
YEAST_2:1779411_AT	Protein required for efficient mating, member of a family of eukaryotic proteins that contain a domain homologous to Sac1p	Sc

Protein Similarities

Method	ID	Description	E-Value
blast	CAB05701	Hypothetical protein C34B7.2 [Caenorhabditis elegans] ref\|NP_492266.2\| C34B7.2 [Caenorhabditis elegans]	0.0
blast	CAE60466	Hypothetical protein CBG04077 [Caenorhabditis briggsae]	0.0
blast	CAC42264	Hypothetical protein C34B7.4 [Caenorhabditis elegans] ref\|NP_492265.1\| C34B7.4 [Caenorhabditis elegans]	0.0
blast	XP_394455	PREDICTED: similar to Protein KIAA0274 [Apis mellifera]	1.0E-145

Protein Domains

Database	ID	Description	E-Value
Pfam	IPR002013 EMBL-EBI	Synaptojanin, N-terminal	1.0E-126
Pfam	IPR002013 EMBL-EBI	Synaptojanin, N-terminal	1.0E-126
Pfam	IPR002717 EMBL-EBI	MOZ/SAS-like protein	2.9E-78

Sequence

Target Sequence

>C. ELEGANS:192744_AT
tggtacgatcttgtcaatgctccgggtaatgtcaccacgactctacagaaatctccaact
aaacgagaatctactcctcctcgaaacacttcaagagctaaacgatcactattgagcact
ggtcttcaatttgcaaaagatatttatcatttggatcatttaaaaacgcaaccagaagaa
cgacgatattatgagaaatatgcaatcacggctttcaagtgtaatgtcagagattgggag
aaggttaagcccacattactcagtgaattcaagattacttcggaagttgaaccacggcga
cccacattcttcaccactgatgactgttacaggactgaatcaccagaagtgagcggaaac
tctgcacggttttacatcaaaagttcacatccactgactacagaatgttcggcccaag

BLASTn GenBank NR

Probe Info

Probe Sequence(5'-3')	Probe X	Probe Y	Probe Interrogation Position	Strandedness
TGGTACGATCTTGTCAATGCTCCGG	49	553	2323	Antisense
CAATGCTCCGGGTAATGTCACCACG	256	183	2337	Antisense
GTCACCACGACTCTACAGAAATCTC	296	465	2353	Antisense
ACTAAACGAGAATCTACTCCTCCTC	70	99	2380	Antisense
ACTCCTCCTCGAAACACTTCAAGAG	557	99	2395	Antisense
GATCACTATTGAGCACTGGTCTTCA	614	421	2426	Antisense
GGTTAAGCCCACATTACTCAGTGAA	220	505	2565	Antisense
CCACATTCTTCACCACTGATGACTG	617	275	2624	Antisense
GAGCGGAAACTCTGCACGGTTTTAC	155	383	2673	Antisense
AAAAGTTCACATCCACTGACTACAG	254	133	2701	Antisense
CTGACTACAGAATGTTCGGCCCAAG	332	239	2716	Antisense

Sequence Source

Affymetrix Proprietary Database

Description	C34B7.2 /REP_DB=WormBase Gene ID /WP=CE08566 /TR=P90770 /GB=CAB05701.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Yeast hypothetical protein YNOD like
Cluster	6grp_highest_10_10 > 36 6grp_high1_10_10 > 63 4grp_highest_8_8 > 42 4grp_high_8_8 > 48 6grp_highest_nonorm > 75 6grp_total > 52 4grp_total > 54 6grp_highest_sub > 03 6grp_high1_sub > 03 6grp_total_sub > Hat