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[192742_s_at]

Description R09B3.1 /REP_DB=WormBase Gene ID /WP=CE16306 /GEN=exo-3 /TR=O45711 /GB=CAB03235.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=AP endonucleases family 1
Cluster 6grp_total > 97      4grp_total > 40      6grp_cgc > 68      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 24.8
(-3)
A 		61
(-0.7)
A 		118.6
(3)
P 		52.2
(-1.2)
A 		94
B 36.3
(-3)
A 		69.8
(1.2)
A 		84.5
(3)
A 		70.7
(1.3)
P 		48
C 55.4
(-2.6)
P 		51
(-3)
A 		114.5
(3)
P 		107.8
(2.4)
P 		64
avr 38.8
(-3) 		60.6
(-1.1) 		105.9
(3) 		76.9
(0.4) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 290
1 2 3 4 5 6 range
A 5.2
(-3)
A 		37.4
(-2.2)
A 		44.8
(-2)
A 		93
(-0.9)
P 		147.6
(0.4)
P 		255.1
(3)
P 		250
B 3.3
(-3)
A 		25.7
(-2.5)
A 		78.6
(-1.4)
P 		86.8
(-1.3)
P 		167.7
(0.4)
P 		293.2
(3)
P 		290
C 46.4
(-3)
A 		52.6
(-2.8)
A 		46.7
(-3)
A 		69.1
(-2.4)
P 		241.2
(1.8)
P 		288.5
(3)
P 		242
avr 18.3
(-3) 		38.6
(-2.5) 		56.7
(-2.1) 		83
(-1.5) 		185.5
(0.8) 		278.9
(3) 		261
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 9
(-2.6)
A 		13.2
(-1.6)
A 		31
(3)
P 		7.6
(-3)
A 		23
B 11.6
(-3)
A 		17.2
(1.2)
A 		19.6
(3)
A 		15.1
(-0.4)
P 		8
C 18.3
(-2.1)
P 		14.7
(-3)
A 		39.9
(3)
P 		18.2
(-2.2)
P 		25
avr 13
(-3) 		15
(-2.3) 		30.2
(3) 		13.6
(-2.8) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 1
(-3)
A 		13.3
(-1.8)
A 		9.8
(-2.1)
A 		23.6
(-0.8)
P 		44.5
(1.3)
P 		62.1
(3)
P 		61
B 1.1
(-3)
A 		8.6
(-2.6)
A 		19.1
(-2)
P 		23
(-1.8)
P 		68.1
(0.7)
P 		109.3
(3)
P 		108
C 17.2
(-2.6)
A 		16
(-2.7)
A 		11.9
(-3)
A 		13.9
(-2.9)
P 		78.1
(1.7)
P 		96.6
(3)
P 		85
avr 6.4
(-3) 		12.6
(-2.6) 		13.6
(-2.5) 		20.2
(-2) 		63.6
(1.1) 		89.3
(3) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192742_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2151
Sequence Type Exemplar sequence
Representative Public ID R09B3.1 NCBI
Target Description R09B3.1 /REP_DB=WormBase Gene ID /WP=CE16306 /GEN=exo-3 /TR=O45711 /GB=CAB03235.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=AP endonucleases family 1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026413(11), NM_001026414(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026413 NCBI Caenorhabditis elegans EXOnuclease family member (exo-3) (exo-3) mRNA, complete cds. 11/11 None
NM_001026414 NCBI Caenorhabditis elegans EXOnuclease family member (exo-3) (exo-3) mRNA, complete cds. 11/11 None
SNAP00000010419 ENSEMBL cdna:SNAP chromosome:CEL140:I:11915766:11917328:-1 11/11 None
GENEFINDER00000010425 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11915766:11917328:-1 11/11 None
R09B3.1 ENSEMBL cdna:known chromosome:CEL140:I:11915723:11917373:-1 gene:R09B3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11915696-11917259(-) 100.0 100.0
Public Domain and Genome References
Ensembl R09B3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03235 Hypothetical protein R09B3.1a [Caenorhabditis elegans] ref|NP_001021584.1| EXOnuclease family member (exo-3) [Caenorhabditis elegans] gb|AAC82328.1| exonuclease III homolog [Caenorhabditis elegans] 1.0E-169
blast CAB03235 Hypothetical protein R09B3.1a [Caenorhabditis elegans] ref|NP_001021584.1| EXOnuclease family member (exo-3) [Caenorhabditis elegans] gb|AAC82328.1| exonuclease III homolog [Caenorhabditis elegans] 1.0E-155
blast CAE71716 Hypothetical protein CBG18693 [Caenorhabditis briggsae] 1.0E-139
blast CAE71716 Hypothetical protein CBG18693 [Caenorhabditis briggsae] 1.0E-126
blast CAI79211 Hypothetical protein R09B3.1b [Caenorhabditis elegans] ref|NP_001021585.1| EXOnuclease family member (exo-3) [Caenorhabditis elegans] 1.0E-105
blast CAI79211 Hypothetical protein R09B3.1b [Caenorhabditis elegans] ref|NP_001021585.1| EXOnuclease family member (exo-3) [Caenorhabditis elegans] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 2.8E-46
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 6.1E-18
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 7.5E-34
Sequence
Target Sequence 
>C. ELEGANS:192742_S_AT
gaagaacggtggctacgcaggagtcgggctgctcagcaaatgtgctccgatgaaggttca
caaaggaatcggtgacccagaattcgacactgccggacgtctgatcatcgccgagttctc
caagttttactttatcggagcttacgttccaaattcgggcgcgaagctggtgaatttgga
gaaacgaggacgctgggagaagctgctgaccgagaagatgaaggagatggacgagaagaa
gccagtgatctacgggggtgatttgaatgttgcacataatgaaattgatctgaaaaatcc
agaatcaaatcgaaataaaaccgcgggattcacagatcaagaacgtggatggttcagtga
gatgctcgagttgggattcaccgacaccttcagagccatgcatcccgacgagaagaagta
ctcattttggagttatctggcgaattctcggcagaaagatgttggatggagattggatta
ttatgttgtcagcaatcgaattatgaataaggtcaaacgcagtgatatcatgagctcggt
gatgggaagcgacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAACGGTGGCTACGCAGGAGTC 660 331 294 Antisense
CTACGCAGGAGTCGGGCTGCTCAGC 4 227 306 Antisense
GCAAATGTGCTCCGATGAAGGTTCA 677 317 329 Antisense
AGGAATCGGTGACCCAGAATTCGAC 665 53 357 Antisense
TCATCGCCGAGTTCTCCAAGTTTTA 594 621 398 Antisense
GAGCTTACGTTCCAAATTCGGGCGC 509 371 431 Antisense
ATTCGGGCGCGAAGCTGGTGAATTT 581 9 446 Antisense
AGGACGCTGGGAGAAGCTGCTGACC 20 57 480 Antisense
GAAGCCAGTGATCTACGGGGGTGAT 39 343 531 Antisense
GGAGTTATCTGGCGAATTCTCGGCA 480 515 722 Antisense
TGAGCTCGGTGATGGGAAGCGACCA 681 553 824 Antisense
Sequence Source Affymetrix Proprietary Database