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[192740_at] tetracycline resistance like protein

Description F09A5.1 /REP_DB=WormBase Gene ID /WP=CE03173 /TR=Q19235 /GB=CAA93644.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=tetracycline resistance like protein
Cluster 6grp_total > 94      4grp_total > 46      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 204.8
(3)
P 		127.6
(-1.6)
A 		116.3
(-2.3)
A 		105.1
(-3)
A 		100
B 158.7
(2.6)
P 		164.2
(3)
P 		89.2
(-3)
A 		137.3
(0.8)
A 		75
C 177.3
(3)
P 		145.4
(-0.3)
A 		118.5
(-3)
P 		144
(-0.4)
A 		59
avr 180.3
(3) 		145.7
(0.1) 		108
(-3) 		128.8
(-1.3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 111.5
(-1.6)
A 		106.4
(-3)
A 		110.5
(-1.9)
A 		128.8
(3)
A 		114.8
(-0.8)
A 		127.9
(2.8)
A 		22
B 106.6
(-1.8)
A 		102.3
(-2.5)
A 		98.8
(-3)
A 		137.3
(3)
A 		126.9
(1.4)
A 		116
(-0.3)
A 		39
C 133.4
(-0.2)
P 		159.7
(3)
M 		148.9
(1.7)
A 		110.1
(-3)
A 		136.6
(0.2)
A 		126.1
(-1.1)
A 		50
avr 117.2
(-3) 		122.8
(0.8) 		119.4
(-1.5) 		125.4
(2.5) 		126.1
(3) 		123.3
(1.1) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 74.6
(3)
P 		27.7
(-1.8)
A 		30.4
(-1.5)
A 		15.4
(-3)
A 		59
B 50.6
(3)
P 		40.5
(1)
P 		20.7
(-3)
A 		29.3
(-1.3)
A 		30
C 58.7
(3)
P 		41.8
(0.1)
A 		41.3
(-0)
P 		24.3
(-3)
A 		34
avr 61.3
(3) 		36.7
(-0.9) 		30.8
(-1.8) 		23
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 20.5
(-3)
A 		37.8
(3)
A 		24.1
(-1.8)
A 		32.7
(1.2)
A 		34.6
(1.9)
A 		31.1
(0.7)
A 		17
B 37.1
(-0.1)
A 		34
(-0.8)
A 		24
(-3)
A 		36.4
(-0.3)
A 		51.5
(3)
A 		43.3
(1.2)
A 		28
C 49.4
(3)
P 		48.7
(2.8)
M 		37.9
(0.5)
A 		22.1
(-3)
A 		44.2
(1.9)
A 		42.2
(1.4)
A 		27
avr 35.7
(-0.1) 		40.2
(1.7) 		28.7
(-3) 		30.4
(-2.3) 		43.4
(3) 		38.9
(1.2) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192740_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17586
Sequence Type Exemplar sequence
Representative Public ID F09A5.1 NCBI
Target Description F09A5.1 /REP_DB=WormBase Gene ID /WP=CE03173 /TR=Q19235 /GB=CAA93644.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=tetracycline resistance like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077780(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077780 NCBI Caenorhabditis elegans F09A5.1 (F09A5.1) mRNA, complete cds. 10/11 None
SNAP00000018915 ENSEMBL cdna:SNAP chromosome:CEL140:X:13130182:13133829:1 10/11 None
GENEFINDER00000018921 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13130182:13133829:1 10/11 None
F09A5.1 ENSEMBL cdna:known chromosome:CEL140:X:13130182:13133167:1 gene:F09A5.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13130181-13133167(+) 100.0 100.0
Public Domain and Genome References
Gene Title tetracycline resistance like protein
Ensembl F09A5.1
Entrez Gene 184219 Entrez gene
SwissProt Q19235 EMBL-EBI
WormBase CE34168 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93644 Hypothetical protein F09A5.1 [Caenorhabditis elegans] ref|NP_510181.2| F09A5.1 [Caenorhabditis elegans] 0.0
blast CAE61389 Hypothetical protein CBG05238 [Caenorhabditis briggsae] 0.0
blast CAE58662 Hypothetical protein CBG01831 [Caenorhabditis briggsae] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 1.1E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510181.2 10 9-31,46-68,75-94,98-120,136-155,165-187,223-245,273-295,315-337,341-360
F09A5.1 10 9-31,46-68,75-94,98-120,136-155,165-187,223-245,273-295,315-337,341-360
SNAP00000018915 12 9-31,46-68,75-94,98-120,136-155,165-187,223-245,273-295,315-337,342-364,377-399,419-441
GENEFINDER00000018921 12 9-31,46-68,75-94,98-120,136-155,165-187,223-245,273-295,315-337,342-364,377-399,419-441
Sequence
Target Sequence 
>C. ELEGANS:192740_AT
agatactactgtcaggccttctacgtcttattggaaagatctgaaagtgctcccaaccta
cgtggtaactacattggcttacacagctttaatatttgtcagtggaacattgacatggtg
gatgccaacgattattgaatactcggcagcctggacaagaggatacaaaagtattaagga
gcttcccctgtcttttaaaaatgaaacgggtcttatttttggtctgctaacaactgcttg
tggaataattggaactcttctaggaaaccttcttgctcaatgttttctgtatggttggct
cggagcttggagcaaaacgaaacgtgctcatttagtagccgcagggtgtggagctcttat
atctacgccatgtttagttgtcgtttttgtatttggtcacagcagtgaactgcttacctg
gatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATACTACTGTCAGGCCTTCTACG 276 65 654 Antisense
AAAGATCTGAAAGTGCTCCCAACCT 55 123 688 Antisense
TGCTCCCAACCTACGTGGTAACTAC 577 555 701 Antisense
AAGTATTAAGGAGCTTCCCCTGTCT 322 155 822 Antisense
GGGTCTTATTTTTGGTCTGCTAACA 704 495 861 Antisense
GAAACCTTCTTGCTCAATGTTTTCT 167 359 917 Antisense
GTTTTCTGTATGGTTGGCTCGGAGC 397 447 935 Antisense
GAAACGTGCTCATTTAGTAGCCGCA 551 357 972 Antisense
AGTAGCCGCAGGGTGTGGAGCTCTT 454 61 987 Antisense
AGCTCTTATATCTACGCCATGTTTA 289 79 1005 Antisense
GCAGTGAACTGCTTACCTGGATCAT 174 311 1055 Antisense
Sequence Source Affymetrix Proprietary Database