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[192737_at] testis-specific protein TPX-1 like

Description F49E11.10 /REP_DB=WormBase Gene ID /WP=CE05906 /TR=Q20603 /GB=CAA94344.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 39      6grp_total > 85      4grp_total > 61      6grp_highest_sub > In      6grp_high1_sub > In      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4328
1 2 3 4 range
A 3400.5
(3)
P 		2528.5
(1.4)
P 		2836.7
(1.9)
P 		214.9
(-3)
P 		3186
B 4542.8
(3)
P 		2354
(-0.1)
P 		2824.1
(0.6)
P 		243.3
(-3)
P 		4300
C 4058.8
(3)
P 		2391.7
(0.4)
P 		2903
(1.2)
P 		253.3
(-3)
P 		3806
avr 4000.7
(3) 		2424.7
(0.5) 		2854.6
(1.2) 		237.2
(-3) 		3764

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10480
1 2 3 4 5 6 range
A 1803.7
(-3)
P 		2197.1
(-2.8)
P 		5292.9
(-1)
P 		8899.8
(1.1)
P 		8490.2
(0.9)
P 		12069.2
(3)
P 		10266
B 1589
(-3)
P 		1929.7
(-2.8)
P 		4790.8
(-0.8)
P 		7202.5
(0.8)
P 		9090.5
(2.1)
P 		10344.7
(3)
P 		8756
C 1874.7
(-3)
P 		1842
(-3)
P 		5151.4
(-0.9)
P 		8187.2
(1)
P 		9527.6
(1.9)
P 		11331.1
(3)
P 		9489
avr 1755.8
(-3) 		1989.6
(-2.9) 		5078.4
(-0.9) 		8096.5
(1) 		9036.1
(1.6) 		11248.3
(3) 		9493
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1417
1 2 3 4 range
A 1238.1
(3)
P 		548.9
(-0.4)
P 		741.6
(0.5)
P 		31.5
(-3)
P 		1207
B 1448.7
(3)
P 		581.4
(-0.7)
P 		654.4
(-0.4)
P 		51.8
(-3)
P 		1397
C 1343.6
(3)
P 		687.6
(-0)
P 		1011.8
(1.5)
P 		42.7
(-3)
P 		1301
avr 1343.5
(3) 		606
(-0.4) 		802.6
(0.5) 		42
(-3) 		1302

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3525
1 2 3 4 5 6 range
A 332.5
(-3)
P 		781.4
(-2)
P 		1152.7
(-1.1)
P 		2257.2
(1.4)
P 		2562
(2.1)
P 		2938.5
(3)
P 		2606
B 552.9
(-3)
P 		642.3
(-2.8)
P 		1163.4
(-1.9)
P 		1907.7
(-0.5)
P 		3693.3
(2.7)
P 		3857.5
(3)
P 		3305
C 694.9
(-2.8)
P 		562
(-3)
P 		1311.1
(-1.6)
P 		1646.5
(-1)
P 		3083
(1.7)
P 		3793.2
(3)
P 		3231
avr 526.8
(-3) 		661.9
(-2.7) 		1209.1
(-1.6) 		1937.1
(-0.2) 		3112.8
(2.2) 		3529.7
(3) 		3003
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192737_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8643
Sequence Type Exemplar sequence
Representative Public ID F49E11.10 NCBI
Target Description F49E11.10 /REP_DB=WormBase Gene ID /WP=CE05906 /TR=Q20603 /GB=CAA94344.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070102(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070102 NCBI Caenorhabditis elegans F49E11.10 (F49E11.10) mRNA, complete cds. 11/11 None
SNAP00000011576 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13057692:13058968:1 11/11 None
GENEFINDER00000011580 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13057692:13058968:1 11/11 None
F49E11.10 ENSEMBL cdna:known chromosome:CEL140:IV:13057675:13059019:1 gene:F49E11.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13057697-13058974(+) 100.0 100.0
Public Domain and Genome References
Gene Title testis-specific protein TPX-1 like
Ensembl F49E11.10
Entrez Gene 178251 Entrez gene
SwissProt Q20603 EMBL-EBI
WormBase CE05906 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94344 Hypothetical protein F49E11.10 [Caenorhabditis elegans] ref|NP_502503.1| F49E11.10 [Caenorhabditis elegans] 1.0E-121
blast CAE58676 Hypothetical protein CBG01850 [Caenorhabditis briggsae] 1.0E-101
blast CAA94335 Hypothetical protein C39E9.2 [Caenorhabditis elegans] ref|NP_502506.1| C39E9.2 [Caenorhabditis elegans] 1.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 6.6E-63
Sequence
Target Sequence 
>C. ELEGANS:192737_AT
ttacttgttgctggttgtggcgcttgctgttggctgctccgctgatttcggctcttccgg
acaaaacggaattatcaatgcacataacactctgcggtctaaaattgcaaaaggtaccta
cgtggcaaaaggaactcagaaatcgccgggaacaaatctgttgaaaatgaaatgggattc
cgcagtcgccgcatccgcccaaaactacgcaaacgggtgtccgacgggacactctggaga
tgcaggccttggggagaatttgtattggtattggacaagtggatctctgggagacctcaa
tcaatatggatctgctgcgtcggcatcatgggaaaaagaattccaagattacggatggaa
gtctaaccttatgactatcgatctcttcaacacaggaatcggacacgcgactcaaatggc
gtgggcgaaatccaacctgatcggatgtggagtcaaggattgtggaagagactcaaacgg
cctgaacaaagtaaccgtcgtgtgccagtacaagccgcaaggaaacttcattaatcaata
catctacgtatcgggagcaacctgttccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACTTGTTGCTGGTTGTGGCGCTT 184 683 18 Antisense
GATTTCGGCTCTTCCGGACAAAACG 186 425 61 Antisense
AATGCACATAACACTCTGCGGTCTA 624 165 94 Antisense
ATGAAATGGGATTCCGCAGTCGCCG 189 45 184 Antisense
GTCCGACGGGACACTCTGGAGATGC 114 477 236 Antisense
GTGGATCTCTGGGAGACCTCAATCA 191 489 296 Antisense
AATATGGATCTGCTGCGTCGGCATC 135 173 320 Antisense
TAACCTTATGACTATCGATCTCTTC 643 635 381 Antisense
GCGTGGGCGAAATCCAACCTGATCG 436 287 436 Antisense
CAAAGTAACCGTCGTGTGCCAGTAC 345 187 504 Antisense
ACGTATCGGGAGCAACCTGTTCCGG 582 91 563 Antisense
Sequence Source Affymetrix Proprietary Database