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[192732_at]

Description C49H3.5 /REP_DB=WormBase Gene ID /WP=CE27872 /TR=Q9GYQ9 /GB=AAF99894.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=zinc-finger transcription regulator
Cluster 6grp_high1_10_10 > 28      6grp_total > 28      4grp_total > 06      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 230
1 2 3 4 range
A 311.6
(-0.7)
P 		239.7
(-3)
A 		267.6
(-2.1)
A 		430.8
(3)
P 		191
B 350
(0.7)
P 		206.5
(-3)
A 		215.8
(-2.8)
A 		436.4
(3)
P 		230
C 341.8
(0.6)
P 		250.2
(-3)
A 		274.8
(-2)
P 		401.9
(3)
P 		152
avr 334.5
(0.2) 		232.1
(-3) 		252.7
(-2.4) 		423
(3) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 313
1 2 3 4 5 6 range
A 341.5
(3)
M 		329.3
(2.6)
P 		147
(-3)
A 		253.5
(0.3)
P 		261.9
(0.5)
P 		303
(1.8)
P 		195
B 297.2
(3)
P 		260.6
(1)
P 		236.1
(-0.3)
P 		269.9
(1.5)
P 		185.3
(-3)
P 		251.4
(0.5)
P 		112
C 459.9
(3)
P 		265.3
(-2.2)
P 		237
(-3)
A 		261.9
(-2.3)
A 		294.6
(-1.4)
P 		281
(-1.8)
P 		223
avr 366.2
(3) 		285.1
(-0.1) 		206.7
(-3) 		261.8
(-0.9) 		247.3
(-1.5) 		278.5
(-0.3) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 113.5
(3)
P 		52
(-3)
A 		69.9
(-1.3)
A 		63.1
(-1.9)
P 		62
B 111.6
(3)
P 		51
(-2.9)
A 		50
(-3)
A 		93
(1.2)
P 		62
C 113.1
(3)
P 		71.9
(-2.5)
A 		95.8
(0.7)
P 		67.8
(-3)
P 		45
avr 112.7
(3) 		58.3
(-3) 		71.9
(-1.5) 		74.6
(-1.2) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 63
(-0.8)
M 		117.1
(3)
P 		32
(-3)
A 		64.3
(-0.7)
P 		79
(0.3)
P 		73.8
(-0.1)
P 		85
B 103.4
(3)
P 		86.7
(0.8)
P 		57.3
(-3)
P 		71.5
(-1.2)
P 		75.3
(-0.7)
P 		93.8
(1.8)
P 		46
C 170.5
(3)
P 		81
(-1.6)
P 		60.3
(-2.6)
A 		52.7
(-3)
A 		95.3
(-0.8)
P 		94.1
(-0.9)
P 		118
avr 112.3
(3) 		94.9
(1.3) 		49.9
(-3) 		62.8
(-1.8) 		83.2
(0.2) 		87.2
(0.6) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192732_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9933
Sequence Type Exemplar sequence
Representative Public ID C49H3.5 NCBI
Target Description C49H3.5 /REP_DB=WormBase Gene ID /WP=CE27872 /TR=Q9GYQ9 /GB=AAF99894.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=zinc-finger transcription regulator
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171388(11), NM_171389(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171388 NCBI Caenorhabditis elegans NOT-Like (yeast CCR4/NOT complex component) family member (ntl-4) (ntl-4) mRNA, complete cds. 11/11 None
NM_171389 NCBI Caenorhabditis elegans NOT-Like (yeast CCR4/NOT complex component) family member (ntl-4) (ntl-4) mRNA, complete cds. 11/11 None
SNAP00000028668 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7910629:7914250:1 11/11 None
GENEFINDER00000028682 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7910629:7914250:1 11/11 None
C49H3.5a ENSEMBL cdna:known chromosome:CEL140:IV:7910583:7915157:1 gene:C49H3.5 11/11 None
C49H3.5b ENSEMBL cdna:known chromosome:CEL140:IV:7910630:7914250:1 gene:C49H3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7910634-7914256(+) 96.47 100.0
Public Domain and Genome References
Ensembl C49H3.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99894 Not-like (yeast ccr4/not complex component) protein 4, isoform a [Caenorhabditis elegans] ref|NP_741453.1| NOT-Like (yeast CCR4/NOT complex component) family member (ntl-4) [Caenorhabditis elegans] 0.0
blast T34180 hypothetical protein C49H3.5 - Caenorhabditis elegans 0.0
blast CAE70907 Hypothetical protein CBG17704 [Caenorhabditis briggsae] 0.0
blast AAM15564 Not-like (yeast ccr4/not complex component) protein 4, isoform b [Caenorhabditis elegans] ref|NP_741454.1| NOT-Like (yeast CCR4/NOT complex component) family member (ntl-4) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 5.3E-6
Sequence
Target Sequence 
>C. ELEGANS:192732_AT
cagagacagttcgactcgacgcctggattttcacatccattcggaagtatgcagcagcaa
caacagtcttcacagcaacaacaacatcagtctcagtcgtcacagtcgtccagtcttcta
caagacttgttcaatcgccaacagcaacaacatcaagcgcagcaacaagcacaacaacat
caacaacagcagatgtatgctggaatcaactcatacatgtacaatgacatgttgatgcct
cgagtaccatttggaatggcaccacctccaggactcggaggtccatctacgaacagatct
tccacgacacaacaagcacctccacacatgacacaacaatcacaacaacaacagcaacag
caacagtcaagtatgggattgttcggaatgggaggccatcaaagtatgatgcaggatcat
caatcacagcagccacaatctgcacaagatgcattcaaagctcttcttccaaatgtaaat
gttcggtttatggatgataattcgatgtctcgttggtcgcatgagaacagtctgcgatca
tcagccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGAGACAGTTCGACTCGACGCCTG 55 207 1864 Antisense
GACGCCTGGATTTTCACATCCATTC 472 381 1881 Antisense
GACTTGTTCAATCGCCAACAGCAAC 544 371 1987 Antisense
GACATGTTGATGCCTCGAGTACCAT 485 369 2089 Antisense
GCACCACCTCCAGGACTCGGAGGTC 185 315 2122 Antisense
GACTCGGAGGTCCATCTACGAACAG 272 375 2135 Antisense
TACGAACAGATCTTCCACGACACAA 360 649 2151 Antisense
GGATCATCAATCACAGCAGCCACAA 506 509 2277 Antisense
AGATGCATTCAAAGCTCTTCTTCCA 574 67 2310 Antisense
TTCGATGTCTCGTTGGTCGCATGAG 341 693 2364 Antisense
AGAACAGTCTGCGATCATCAGCCGT 325 73 2387 Antisense
Sequence Source Affymetrix Proprietary Database