[Home] | [Total List]

[192731_at] Glucosamine-6-phosphate isomerase

Description T03F6.3 /REP_DB=WormBase Gene ID /WP=CE16337 /TR=SW:Q9XVJ2 /GB=CAB03280.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Glucosamine-6-phosphate isomerase
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 83      4grp_highest_8_8 > 09      4grp_high_8_8 > 61      6grp_highest_nonorm > 54      6grp_total > 74      4grp_total > 58      6grp_high1_sub > 04      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 543
1 2 3 4 range
A 338.2
(-1.1)
P 		635.3
(2.5)
P 		680.5
(3)
P 		182.5
(-3)
P 		498
B 360.8
(-0.8)
P 		646.8
(2.6)
P 		680.5
(3)
P 		171.1
(-3)
P 		509
C 363.5
(-0.5)
P 		544.3
(1.5)
P 		677.2
(3)
P 		137.6
(-3)
P 		540
avr 354.2
(-0.8) 		608.8
(2.2) 		679.4
(3) 		163.7
(-3) 		516

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1406
1 2 3 4 5 6 range
A 435.4
(-3)
P 		447
(-2.9)
P 		1482.5
(3)
P 		1353.7
(2.3)
P 		1392.6
(2.5)
P 		1119.5
(0.9)
P 		1047
B 432
(-3)
P 		501.8
(-2.6)
P 		1545.1
(2.9)
P 		1567
(3)
P 		1503.3
(2.7)
P 		1526.1
(2.8)
P 		1135
C 366.3
(-3)
P 		520.8
(-2.3)
P 		998.6
(-0.3)
P 		1772.3
(3)
P 		1274.5
(0.9)
P 		1678.8
(2.6)
P 		1406
avr 411.2
(-3) 		489.9
(-2.6) 		1342.1
(1.8) 		1564.3
(3) 		1390.1
(2.1) 		1441.5
(2.4) 		1153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 123.1
(0.8)
P 		137.9
(1.4)
P 		177.9
(3)
P 		26.7
(-3)
P 		151
B 115.1
(0.8)
P 		159.7
(3)
P 		157.7
(2.9)
P 		36.5
(-3)
P 		123
C 120.3
(-0.3)
P 		156.5
(0.8)
P 		236
(3)
P 		23.2
(-3)
P 		213
avr 119.5
(0.4) 		151.4
(1.5) 		190.5
(3) 		28.8
(-3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 531
1 2 3 4 5 6 range
A 80.3
(-3)
P 		159
(-1.6)
P 		322.9
(1.3)
P 		343.3
(1.6)
P 		420.2
(3)
P 		272.6
(0.4)
P 		340
B 150.3
(-3)
P 		167
(-2.8)
P 		375.2
(-0.1)
P 		415
(0.4)
P 		610.8
(3)
P 		569.1
(2.5)
P 		461
C 135.8
(-3)
P 		158.9
(-2.7)
P 		254.2
(-1.3)
P 		356.4
(0.1)
P 		412.4
(0.9)
P 		562
(3)
P 		426
avr 122.1
(-3) 		161.6
(-2.3) 		317.4
(0.3) 		371.6
(1.2) 		481.1
(3) 		467.9
(2.8) 		359
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192731_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5995
Sequence Type Exemplar sequence
Representative Public ID T03F6.3 NCBI
Target Description T03F6.3 /REP_DB=WormBase Gene ID /WP=CE16337 /TR=SW:Q9XVJ2 /GB=CAB03280.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Glucosamine-6-phosphate isomerase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067357(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067357 NCBI Caenorhabditis elegans T03F6.3 (T03F6.3) mRNA, complete cds. 11/11 None
SNAP00000014316 ENSEMBL cdna:SNAP chromosome:CEL140:III:13385715:13390229:1 11/11 None
GENEFINDER00000014323 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13388687:13390229:1 11/11 None
T03F6.3 ENSEMBL cdna:known chromosome:CEL140:III:13388923:13390362:1 gene:T03F6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13388918-13390225(+) 100.0 100.0
Public Domain and Genome References
Gene Title Glucosamine-6-phosphate isomerase
Ensembl T03F6.3
Entrez Gene 176760 Entrez gene
SwissProt Q9XVJ2 EMBL-EBI
WormBase CE16337 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.18472.1.S1_S_AT similar to Glucosamine-6-phosphate isomerase (Glucosamine-6-phosphate deaminase) (GNPDA) (GlcN6P deaminase) (Oscillin) cfa
CANINE_2:CFAAFFX.10345.1.S1_AT similar to Glucosamine-6-phosphate isomerase (Glucosamine-6-phosphate deaminase) (GNPDA) (GlcN6P deaminase) (Oscillin) cfa
CHICKEN:GGA.8913.1.S1_S_AT glucosamine-6-phosphate deaminase 1 gga
HG-U133_PLUS_2:202382_S_AT glucosamine-6-phosphate deaminase 1 hs
HG-U133A:202382_S_AT glucosamine-6-phosphate deaminase 1 hs
HG-FOCUS:202382_S_AT glucosamine-6-phosphate deaminase 1 hs
HG-U133A_2:202382_S_AT glucosamine-6-phosphate deaminase 1 hs
HG-U95AV2:34332_AT glucosamine-6-phosphate deaminase 1 hs
HU35KSUBD:RC_AA449788_F_AT glucosamine-6-phosphate deaminase 1 hs
HUGENEFL:D31766_AT glucosamine-6-phosphate deaminase 1 hs
U133_X3P:G13027377_3P_S_AT glucosamine-6-phosphate deaminase 1 hs
HG-U95E:83417_I_AT Glucosamine-6-phosphate deaminase 1 hs
HG-U95E:83418_F_AT Glucosamine-6-phosphate deaminase 1 hs
MOE430A:1448163_AT glucosamine-6-phosphate deaminase 1 mm
MOUSE430A_2:1448163_AT glucosamine-6-phosphate deaminase 1 mm
MOUSE430_2:1448163_AT glucosamine-6-phosphate deaminase 1 mm
MU19KSUBC:TC35636_AT Glucosamine-6-phosphate deaminase 1, mRNA (cDNA clone MGC:25224 IMAGE:4220980) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
6044 N-acetylglucosamine metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4342 glucosamine-6-phosphate deaminase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03281 Hypothetical protein T03F6.4 [Caenorhabditis elegans] ref|NP_499757.2| T03F6.4 [Caenorhabditis elegans] 0.0
blast CAE73713 Hypothetical protein CBG21226 [Caenorhabditis briggsae] 1.0E-167
blast CAB03280 Hypothetical protein T03F6.3 [Caenorhabditis elegans] ref|NP_499758.1| T03F6.3 [Caenorhabditis elegans] sp|Q9XVJ2|GNPI_CAEEL Probable glucosamine-6-phosphate isomerase (Glucosamine-6-phosphate deaminase) (GNPDA) (GlcN6P deaminase) 1.0E-152
blast CAB03280 Hypothetical protein T03F6.3 [Caenorhabditis elegans] ref|NP_499758.1| T03F6.3 [Caenorhabditis elegans] sp|Q9XVJ2|GNPI_CAEEL Probable glucosamine-6-phosphate isomerase (Glucosamine-6-phosphate deaminase) (GNPDA) (GlcN6P deaminase) 1.0E-151
blast CAE73708 Hypothetical protein CBG21221 [Caenorhabditis briggsae] 1.0E-134
blast XP_393026 PREDICTED: similar to ENSANGP00000027824 [Apis mellifera] 1.0E-105
Protein Families
Method ID Description E-Value
ec 6PGL_HUMAN (O95336) 6-phosphogluconolactonase (EC 3.1.1.31) (6PGL) 2.0E-8
Protein Domains
Database ID Description E-Value
Pfam IPR006148 EMBL-EBI Glucosamine/galactosamine-6-phosphate isomerase 1.0E-126
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.2E-6
Pfam IPR006148 EMBL-EBI Glucosamine/galactosamine-6-phosphate isomerase 1.0E-126
Pfam IPR006148 EMBL-EBI Glucosamine/galactosamine-6-phosphate isomerase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192731_AT
gacgagtatgtcgatcttccacgtgaccatacagaatcgtatcactccttcatgtttgac
aactttttccgacacattgacattaatccagctaatattcacattctcgacggaaatacg
tctgatcacgagaaggagtgtgaagagtacgagcgtaaaatcaaagaatctggcggaatc
gatttatttgtcggtggaattggtccagatggccatattgcgttcaatgagcccggaagt
tcgctggcaagccgtacacgtatcaagaccctcaacgaggatacaattcaggctaacgct
cgtttcttcggtggagacatcacaaaagtgccaacacaagctctgacagtcggcgtccag
actgtaatggatgctcgtgaagtgatgattctcatcacaggatcacacaaagcgctggct
cttcatcaggcaatcgaatgcggaatctctcacatgtgtacggtctctgcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGAGTATGTCGATCTTCCACGTG 297 379 223 Antisense
CAGAATCGTATCACTCCTTCATGTT 624 203 254 Antisense
GTTTGACAACTTTTTCCGACACATT 198 451 276 Antisense
GGTCCAGATGGCCATATTGCGTTCA 98 503 424 Antisense
TGAGCCCGGAAGTTCGCTGGCAAGC 523 555 450 Antisense
GCTGGCAAGCCGTACACGTATCAAG 174 295 465 Antisense
ACAATTCAGGCTAACGCTCGTTTCT 55 115 505 Antisense
AACACAAGCTCTGACAGTCGGCGTC 533 135 555 Antisense
ATCACACAAAGCGCTGGCTCTTCAT 511 27 624 Antisense
GCAATCGAATGCGGAATCTCTCACA 681 321 652 Antisense
TCTCACATGTGTACGGTCTCTGCGA 536 613 670 Antisense
Sequence Source Affymetrix Proprietary Database