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[192730_at]

Description T22D1.3 /REP_DB=WormBase Gene ID /WP=CE17247 /TR=Q9GZH3 /GB=AAF98635.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=inosine monophosphate dehydrogenase
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 86      6grp_total > 59      4grp_total > 02      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 966
1 2 3 4 range
A 1274.9
(-0.3)
P 		936.6
(-3)
P 		1146.9
(-1.3)
P 		1681
(3)
P 		744
B 1225.3
(-2.9)
P 		1211.2
(-3)
P 		1285.8
(-2.4)
P 		1902.2
(3)
P 		691
C 1181.7
(-3)
P 		1501.3
(-0.3)
P 		1193.5
(-2.9)
P 		1883.3
(3)
P 		702
avr 1227.3
(-2.8) 		1216.4
(-2.9) 		1208.7
(-3) 		1822.2
(3) 		614

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 497
1 2 3 4 5 6 range
A 975.7
(-1)
P 		856.5
(-3)
P 		855.2
(-3)
P 		1037.4
(0)
P 		1063
(0.5)
P 		1214.9
(3)
P 		360
B 955.6
(-1.8)
P 		916.2
(-3)
P 		957.4
(-1.7)
P 		951.6
(-1.9)
P 		1067
(1.6)
P 		1112.2
(3)
P 		196
C 1352.6
(3)
P 		914.7
(-3)
P 		964
(-2.3)
P 		1051.7
(-1.1)
P 		1110.4
(-0.3)
P 		1336.4
(2.8)
P 		438
avr 1094.6
(0.7) 		895.8
(-3) 		925.5
(-2.5) 		1013.6
(-0.8) 		1080.1
(0.4) 		1221.2
(3) 		325
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 261
1 2 3 4 range
A 464.2
(3)
P 		203.3
(-3)
P 		299.8
(-0.8)
P 		246.1
(-2)
P 		261
B 390.7
(2.2)
P 		299.2
(-2.9)
P 		297.9
(-3)
P 		405.4
(3)
P 		108
C 391.2
(0.9)
P 		431.6
(3)
P 		416
(2.2)
P 		317.6
(-3)
P 		114
avr 415.4
(3) 		311.4
(-3) 		337.9
(-1.5) 		323
(-2.3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 322
1 2 3 4 5 6 range
A 179.9
(-3)
P 		304.6
(2.3)
P 		186.2
(-2.7)
P 		263.1
(0.5)
P 		320.8
(3)
P 		295.8
(1.9)
P 		141
B 332.5
(-0)
P 		304.9
(-0.8)
P 		232.5
(-3)
P 		252
(-2.4)
P 		433.5
(3)
P 		414.7
(2.4)
P 		201
C 501.4
(3)
P 		279.1
(-1.6)
P 		245.3
(-2.3)
P 		211.5
(-3)
P 		359.3
(0.1)
P 		447.4
(1.9)
P 		290
avr 337.9
(1.2) 		296.2
(-0.3) 		221.3
(-3) 		242.2
(-2.2) 		371.2
(2.5) 		386
(3) 		165
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192730_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8503
Sequence Type Exemplar sequence
Representative Public ID T22D1.3 NCBI
Target Description T22D1.3 /REP_DB=WormBase Gene ID /WP=CE17247 /TR=Q9GZH3 /GB=AAF98635.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=inosine monophosphate dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028225(11), NM_001028224(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028225 NCBI Caenorhabditis elegans T22D1.3b (T22D1.3) mRNA, complete cds. 11/11 None
NM_001028224 NCBI Caenorhabditis elegans T22D1.3a (T22D1.3) mRNA, complete cds. 11/11 None
SNAP00000024011 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6913526:6916421:1 11/11 None
GENEFINDER00000024019 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6913526:6916857:1 11/11 None
T22D1.3b.2 ENSEMBL cdna:known chromosome:CEL140:IV:6913518:6917096:1 gene:T22D1.3 11/11 None
T22D1.3b.1 ENSEMBL cdna:known chromosome:CEL140:IV:6913522:6917096:1 gene:T22D1.3 11/11 None
T22D1.3a ENSEMBL cdna:known chromosome:CEL140:IV:6913526:6917094:1 gene:T22D1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6913531-6916167(+) 98.67 98.67
Public Domain and Genome References
Ensembl T22D1.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO91672 Hypothetical protein T22D1.3b [Caenorhabditis elegans] ref|NP_001023396.1| T22D1.3b [Caenorhabditis elegans] 0.0
blast AAF98635 Hypothetical protein T22D1.3a [Caenorhabditis elegans] ref|NP_001023395.1| T22D1.3a [Caenorhabditis elegans] 0.0
blast CAE61759 Hypothetical protein CBG05718 [Caenorhabditis briggsae] 0.0
blast T32709 IMP dehydrogenase (EC 1.1.1.205) T22D1.3 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001093 EMBL-EBI IMP dehydrogenase/GMP reductase 1.0E-126
Pfam IPR000644 EMBL-EBI CBS domain 8.1E-7
Pfam IPR000644 EMBL-EBI CBS domain 4.1E-5
Pfam IPR001093 EMBL-EBI IMP dehydrogenase/GMP reductase 1.0E-126
Pfam IPR001093 EMBL-EBI IMP dehydrogenase/GMP reductase 1.0E-126
Pfam IPR001093 EMBL-EBI IMP dehydrogenase/GMP reductase 1.0E-126
Pfam IPR000644 EMBL-EBI CBS domain 4.1E-5
Sequence
Target Sequence 
>C. ELEGANS:192730_AT
acatccacatgttcaagttatcgctggaaacgttgttacacgagctcaagctaagcttct
cattgatcaaggagctgatggtcttcgtattggaatgggaagtggatcgatttgtatcac
acaagatgttatggctgttggacgtgctcaaggaactgctgtctatgatgttgctcgtta
cgccaatcaacgtggtattccaattgttgcagatggtggaattcgtgatgttggatacat
tacaaaagccatctcacttggagcatcagctgttatgatgggcggtcttcttgctgctac
cactgaagcgccaggagaatatttctggggaccgggaggttcatttaatttcagtgaatc
tgatcagattaaagtggctcaaggagtttccgccaccatgaaagatcgtggatcatgtca
taaattcatcccatacctcattcgtggtgttcaacatggaatgcaagacattggtgttcg
ctctctccgtgatttccgtgagaaagtcgacaatggaatcgtgaaatttgagagacgttc
gacaaacgctcaactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATCCACATGTTCAAGTTATCGCT 352 107 909 Antisense
GATGTTATGGCTGTTGGACGTGCTC 667 409 1033 Antisense
ACGTGCTCAAGGAACTGCTGTCTAT 402 95 1050 Antisense
GTCTATGATGTTGCTCGTTACGCCA 629 467 1069 Antisense
TACGCCAATCAACGTGGTATTCCAA 261 647 1087 Antisense
TGTTATGATGGGCGGTCTTCTTGCT 675 557 1179 Antisense
TCTTCTTGCTGCTACCACTGAAGCG 389 617 1194 Antisense
GAGTTTCCGCCACCATGAAAGATCG 91 397 1292 Antisense
TCATCCCATACCTCATTCGTGGTGT 330 621 1334 Antisense
TGCAAGACATTGGTGTTCGCTCTCT 192 577 1370 Antisense
GAGACGTTCGACAAACGCTCAACTG 702 385 1440 Antisense
Sequence Source Affymetrix Proprietary Database