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[192728_at] ATP synthase alpha and beta subunits

Description T26E3.7 /REP_DB=WormBase Gene ID /WP=CE14196 /TR=O45827 /GB=CAB04832.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ATP synthase alpha and beta subunits
Cluster 6grp_total > 90      4grp_total > 59      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 7.1
(0.1)
A 		7
(-0.1)
A 		8.6
(3)
A 		5.5
(-3)
A 		3
B 6.9
(-1.2)
A 		10.3
(1.4)
A 		12.3
(3)
A 		4.6
(-3)
A 		8
C 12.8
(1.4)
A 		10.6
(-0.3)
A 		7.1
(-3)
A 		14.9
(3)
A 		8
avr 8.9
(0.6) 		9.3
(3) 		9.3
(3) 		8.3
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 3.7
(-2.1)
A 		7.4
(2.3)
A 		2.9
(-3)
A 		8
(3)
A 		3.8
(-1.9)
A 		5.9
(0.5)
A 		5
B 5.8
(-0.8)
A 		5.2
(-1.5)
A 		3.9
(-3)
A 		9.2
(3)
A 		5.9
(-0.7)
A 		7.6
(1.2)
A 		5
C 5.5
(-1.1)
A 		6.7
(-0)
A 		3.9
(-2.4)
A 		8.2
(1.2)
A 		10.3
(3)
A 		3.2
(-3)
A 		7
avr 5
(-1.3) 		6.4
(0.4) 		3.6
(-3) 		8.5
(3) 		6.7
(0.8) 		5.6
(-0.6) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.6
(3)
A 		1.5
(-0.7)
A 		2.2
(1.7)
A 		0.8
(-3)
A 		2
B 2.2
(0.8)
A 		2.6
(2.1)
A 		2.9
(3)
A 		1
(-3)
A 		2
C 4.2
(3)
A 		3.1
(-0.9)
A 		2.5
(-3)
A 		2.5
(-3)
A 		2
avr 3
(3) 		2.4
(0.8) 		2.5
(1.1) 		1.4
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.7
(-2.7)
A 		2.6
(3)
A 		0.6
(-3)
A 		2
(1.2)
A 		1.1
(-1.5)
A 		1.4
(-0.6)
A 		2
B 2
(0.5)
A 		1.7
(-0.5)
A 		0.9
(-3)
A 		2.4
(1.7)
A 		2.4
(1.7)
A 		2.8
(3)
A 		2
C 2
(-0.4)
A 		2
(-0.4)
A 		1
(-3)
A 		1.6
(-1.4)
A 		3.3
(3)
A 		1.1
(-2.7)
A 		2
avr 1.6
(0.2) 		2.1
(2.2) 		0.8
(-3) 		2
(1.8) 		2.3
(3) 		1.8
(1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192728_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1624
Sequence Type Exemplar sequence
Representative Public ID T26E3.7 NCBI
Target Description T26E3.7 /REP_DB=WormBase Gene ID /WP=CE14196 /TR=O45827 /GB=CAB04832.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ATP synthase alpha and beta subunits
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060802(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060802 NCBI Caenorhabditis elegans T26E3.7 (T26E3.7) mRNA, complete cds. 11/11 None
GENEFINDER00000034758 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12663527:12664091:-1 10/11 None
SNAP00000034744 ENSEMBL cdna:SNAP chromosome:CEL140:I:12663570:12664091:-1 11/11 None
T26E3.7 ENSEMBL cdna:known chromosome:CEL140:I:12663570:12664091:-1 gene:T26E3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12663500-12664022(-) 100.0 100.0
Public Domain and Genome References
Gene Title ATP synthase alpha and beta subunits
Ensembl T26E3.7
Entrez Gene 188925 Entrez gene
SwissProt O45827 EMBL-EBI
WormBase CE14196 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04832 Hypothetical protein T26E3.7 [Caenorhabditis elegans] ref|NP_493203.1| T26E3.7 [Caenorhabditis elegans] 6.0E-56
blast CAB04832 Hypothetical protein T26E3.7 [Caenorhabditis elegans] ref|NP_493203.1| T26E3.7 [Caenorhabditis elegans] 1.0E-41
blast CAF31480 Hypothetical protein H28O16.1d [Caenorhabditis elegans] ref|NP_001021529.1| H28O16.1d [Caenorhabditis elegans] 1.0E-19
blast CAD92384 Hypothetical protein H28O16.1c [Caenorhabditis elegans] ref|NP_001021528.1| H28O16.1c [Caenorhabditis elegans] 1.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR000194 EMBL-EBI H+-transporting two-sector ATPase, alpha/beta subunit, central region 9.7E-19
Sequence
Target Sequence 
>C. ELEGANS:192728_AT
actcaaattcttggccccatacagtggctgcgccattggagagcacttccttgacaacgg
caagcacgccctcatcatcttcgatgatttgtccaagaaagccgcaaactgccacgttgt
ctgcagaactgatgaaatcgaacttgatattctgaacagaatggaagaagatatcaagct
gcatccgttaacttggtacgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCAAATTCTTGGCCCCATACAGT 152 99 60 Antisense
CCCATACAGTGGCTGCGCCATTGGA 1 257 75 Antisense
CGCCATTGGAGAGCACTTCCTTGAC 504 257 90 Antisense
TTCCTTGACAACGGCAAGCACGCCC 637 699 106 Antisense
TCATCTTCGATGATTTGTCCAAGAA 458 621 134 Antisense
GTCCAAGAAAGCCGCAAACTGCCAC 701 477 150 Antisense
CCGCAAACTGCCACGTTGTCTGCAG 38 263 161 Antisense
GCCACGTTGTCTGCAGAACTGATGA 410 279 170 Antisense
GAAATCGAACTTGATATTCTGAACA 74 361 193 Antisense
GAAGATATCAAGCTGCATCCGTTAA 418 337 226 Antisense
GCTGCATCCGTTAACTTGGTACGAT 680 295 237 Antisense
Sequence Source Affymetrix Proprietary Database