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[192726_at] Human placenta (DIFF33) protein like

Description R11H6.2 /REP_DB=WormBase Gene ID /WP=CE12772 /TR=O45719 /GB=CAB07645.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human placenta (DIFF33) protein like
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 87      6grp_total > 78      4grp_total > 12      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1252
1 2 3 4 range
A 1268.1
(-0.5)
P 		980.2
(-1.9)
P 		746.8
(-3)
P 		1992.9
(3)
P 		1246
B 1048.2
(-0.5)
P 		946.7
(-1.3)
P 		740.9
(-3)
P 		1464.9
(3)
P 		724
C 1043.3
(-1.3)
P 		838.9
(-2.7)
P 		796.6
(-3)
P 		1665.4
(3)
P 		869
avr 1119.9
(-0.7) 		921.9
(-2) 		761.4
(-3) 		1707.7
(3) 		946

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 842
1 2 3 4 5 6 range
A 1365.2
(-0.1)
P 		1019
(-3)
P 		1100.9
(-2.3)
P 		1119.8
(-2.2)
P 		1272.4
(-0.9)
P 		1744.1
(3)
P 		725
B 1072.6
(-1.7)
P 		1086.3
(-1.6)
P 		902
(-3)
P 		1116.6
(-1.4)
P 		1330.9
(0.2)
P 		1704.6
(3)
P 		803
C 952
(-3)
P 		1124.3
(-0.3)
P 		1086.2
(-0.9)
P 		1068.1
(-1.2)
P 		1139.2
(-0.1)
P 		1336.1
(3)
P 		384
avr 1129.9
(-1.9) 		1076.5
(-2.5) 		1029.7
(-3) 		1101.5
(-2.2) 		1247.5
(-0.7) 		1594.9
(3) 		565
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 290
1 2 3 4 range
A 461.7
(3)
P 		212.8
(-2.6)
P 		195.2
(-3)
P 		291.7
(-0.8)
P 		267
B 334.3
(3)
P 		233.8
(-0.7)
P 		171.7
(-3)
P 		312.2
(2.2)
P 		163
C 345.4
(3)
P 		241.2
(-3)
P 		277.7
(-0.9)
P 		280.8
(-0.7)
P 		104
avr 380.5
(3) 		229.3
(-2.5) 		214.9
(-3) 		294.9
(-0.1) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 421
1 2 3 4 5 6 range
A 251.7
(-2.6)
P 		362.4
(1)
P 		239.8
(-3)
P 		284
(-1.6)
P 		384
(1.7)
P 		424.6
(3)
P 		185
B 373.2
(-0.8)
P 		361.6
(-0.9)
P 		219
(-3)
P 		295.7
(-1.9)
P 		540.7
(1.6)
P 		635.6
(3)
P 		417
C 352.9
(0.6)
P 		343.1
(0.3)
P 		276.5
(-1.4)
P 		214.8
(-3)
P 		368.6
(1)
P 		447.3
(3)
P 		233
avr 325.9
(-1.1) 		355.7
(-0.4) 		245.1
(-3) 		264.8
(-2.5) 		431.1
(1.3) 		502.5
(3) 		257
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192726_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14692
Sequence Type Exemplar sequence
Representative Public ID R11H6.2 NCBI
Target Description R11H6.2 /REP_DB=WormBase Gene ID /WP=CE12772 /TR=O45719 /GB=CAB07645.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human placenta (DIFF33) protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074210(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074210 NCBI Caenorhabditis elegans R11H6.2 (R11H6.2) mRNA, complete cds. 11/11 None
SNAP00000042447 ENSEMBL cdna:SNAP chromosome:CEL140:V:14600657:14602513:1 11/11 None
GENEFINDER00000042455 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14599784:14602513:1 11/11 None
R11H6.2 ENSEMBL cdna:known chromosome:CEL140:V:14600528:14602675:1 gene:R11H6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14600656-14602513(+) 100.0 100.0
Public Domain and Genome References
Gene Title Human placenta (DIFF33) protein like
Ensembl R11H6.2
Entrez Gene 179964 Entrez gene
SwissProt O45719 EMBL-EBI
WormBase CE12772 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261843_AT TMS membrane family protein / tumour differentially expressed (TDE) family protein at
CANINE:1604252_AT similar to Tumor differentially expressed protein 1 cfa
CANINE:1600456_AT similar to Tumor differentially expressed protein 1 cfa
CANINE_2:CFAAFFX.14912.1.S1_S_AT similar to Tumor differentially expressed protein 1 cfa
CHICKEN:GGAAFFX.12685.1.S1_S_AT tumor differentially expressed 1 gga
CHICKEN:GGAAFFX.2604.2.S1_AT tumor differentially expressed 1 gga
CHICKEN:GGAAFFX.2604.3.S1_S_AT tumor differentially expressed 1 gga
HG-U133_PLUS_2:221471_AT tumor differentially expressed 1 hs
HG-FOCUS:221471_AT tumor differentially expressed 1 hs
HG-U133A_2:221471_AT tumor differentially expressed 1 hs
HG-U133A:221471_AT tumor differentially expressed 1 hs
HG-U133_PLUS_2:211769_X_AT tumor differentially expressed 1 hs
HG-U133A:211769_X_AT tumor differentially expressed 1 hs
HG-U133A_2:211769_X_AT tumor differentially expressed 1 hs
HG-U133_PLUS_2:221472_AT tumor differentially expressed 1 hs
HG-U133A_2:221472_AT tumor differentially expressed 1 hs
HG-U133A:221472_AT tumor differentially expressed 1 hs
HG-U133_PLUS_2:221473_X_AT tumor differentially expressed 1 hs
HG-U133A:221473_X_AT tumor differentially expressed 1 hs
HG-U133A_2:221473_X_AT tumor differentially expressed 1 hs
HUGENEFL:U49188_AT tumor differentially expressed 1 hs
U133_X3P:G13543883_3P_S_AT tumor differentially expressed 1 hs
U133_X3P:G1293562_3P_A_AT tumor differentially expressed 1 hs
U133_X3P:HS.272168.0.S3_3P_AT tumor differentially expressed 1 hs
U133_X3P:HS.272168.0.S2_3P_AT tumor differentially expressed 1 hs
HG-U95AV2:37007_AT tumor differentially expressed 1 hs
HG-U95D:73390_S_AT tumor differentially expressed 1 hs
HG-U95E:87993_S_AT tumor differentially expressed 1 hs
HG-U95B:45303_AT Tumor differentially expressed 1 hs
HU35KSUBA:RC_AA456325_AT Tumor differentially expressed 1 hs
HU35KSUBC:RC_T10513_AT Tumor differentially expressed 1 hs
MOE430A:1456080_A_AT tumor differentially expressed 1 mm
MOUSE430A_2:1456080_A_AT tumor differentially expressed 1 mm
MOUSE430_2:1456080_A_AT tumor differentially expressed 1 mm
MU11KSUBA:L29441_F_AT tumor differentially expressed 1 mm
MU11KSUBB:MSA.1606.0_F_AT tumor differentially expressed 1 mm
MG-U74AV2:100151_AT tumor differentially expressed 1 mm
MOE430A:1417815_A_AT tumor differentially expressed 1 mm
MOUSE430A_2:1417815_A_AT tumor differentially expressed 1 mm
MOUSE430_2:1417815_A_AT tumor differentially expressed 1 mm
MOE430A:1417816_S_AT tumor differentially expressed 1 mm
MOUSE430A_2:1417816_S_AT tumor differentially expressed 1 mm
MOUSE430_2:1417816_S_AT tumor differentially expressed 1 mm
MOE430A:1448847_AT tumor differentially expressed 1 mm
MOUSE430A_2:1448847_AT tumor differentially expressed 1 mm
MOUSE430_2:1448847_AT tumor differentially expressed 1 mm
MOE430B:1434548_AT tumor differentially expressed 1 mm
MOUSE430_2:1434548_AT tumor differentially expressed 1 mm
MU19KSUBA:TC24202_AT Tumor differentially expressed 1, mRNA (cDNA clone MGC:31028 IMAGE:5039323) mm
MU19KSUBB:TC30897_AT Tumor differentially expressed 1, mRNA (cDNA clone MGC:31028 IMAGE:5039323) mm
MU19KSUBB:TC32150_F_AT Tumor differentially expressed 1, mRNA (cDNA clone MGC:31028 IMAGE:5039323) mm
MU19KSUBB:TC34567_F_AT Tumor differentially expressed 1, mRNA (cDNA clone MGC:31028 IMAGE:5039323) mm
MU19KSUBC:TC38128_AT Tumor differentially expressed 1, mRNA (cDNA clone MGC:31028 IMAGE:5039323) mm
RG-U34A:RC_AA799641_G_AT tumor differentially expressed 1 (predicted) rn
RG-U34A:RC_AA799641_AT tumor differentially expressed 1 (predicted) rn
RAE230A:1398986_AT tumor differentially expressed 1 (predicted) rn
RAT230_2:1398986_AT tumor differentially expressed 1 (predicted) rn
RAT230_2:1397197_AT Tumor differentially expressed 1 (predicted) rn
RAE230B:1397197_AT Tumor differentially expressed 1 (predicted) rn
RG-U34C:RC_AI104474_AT Tumor differentially expressed 1 (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07645 Hypothetical protein R11H6.2 [Caenorhabditis elegans] ref|NP_506611.1| R11H6.2 [Caenorhabditis elegans] 0.0
blast CAE60867 Hypothetical protein CBG04578 [Caenorhabditis briggsae] 0.0
blast CAE60867 Hypothetical protein CBG04578 [Caenorhabditis briggsae] 1.0E-167
blast AAL27256 Hypothetical protein Y57E12AL.1a [Caenorhabditis elegans] ref|NP_741561.1| Y57E12AL.1a [Caenorhabditis elegans] 1.0E-138
Protein Domains
Database ID Description E-Value
Pfam IPR005016 EMBL-EBI TMS membrane protein/tumour differentially expressed protein 1.0E-126
Pfam IPR005016 EMBL-EBI TMS membrane protein/tumour differentially expressed protein 1.0E-126
Pfam IPR005016 EMBL-EBI TMS membrane protein/tumour differentially expressed protein 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506611.1 11 5-27,40-62,92-114,127-146,156-175,196-218,233-252,259-281,310-332,375-397,417-437
R11H6.2 11 5-27,40-62,92-114,127-146,156-175,196-218,233-252,259-281,310-332,375-397,417-437
SNAP00000042447 9 37-59,72-91,101-120,141-163,178-197,204-226,255-277,320-342,362-382
GENEFINDER00000042455 11 43-65,85-107,136-158,171-190,200-219,240-262,277-296,303-325,354-376,419-441,461-481
Sequence
Target Sequence 
>C. ELEGANS:192726_AT
tgtggctattagtcttctttccgtttctccgatggttcaggaagttaatccacgatctgg
acttcttcagcctgttgttatcagtgcatatattatttatttgacatggtccgctctttt
gagtaatccaaatgaatcgtgcaatccaactcttgccaatgtcacccaatcagcaattcc
aacaggaggtgtcaccaaggatgactcatttgtaacaccgctccccgttcactcgttgat
ttctcttctcatttggctcatttgtctcgtgtatgcctcgattcgtaactcttcgaacac
ttcgctcggaaaaataactggagacaacgaggaacatgttcagctgaacgacgtcgaagg
tggaaaagcatgggataatgaagaagaaggtgtcgcgtattcgtacagtttcttccattt
tatgttctgccttgcttctctctatgtcatgatgaccctgacttcatggtatcatccgga
cagtgatctagctcatctcaactcgaatatggcatctgtttgggtcaaaatgttctcttc
gtggatctgtggaggtctctatgcgtggactcttgttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGGCTATTAGTCTTCTTTCCGTT 457 555 732 Antisense
GGACTTCTTCAGCCTGTTGTTATCA 159 525 790 Antisense
TTGACATGGTCCGCTCTTTTGAGTA 556 705 832 Antisense
GAATCGTGCAATCCAACTCTTGCCA 317 329 865 Antisense
TTGGCTCATTTGTCTCGTGTATGCC 54 709 984 Antisense
GTGTATGCCTCGATTCGTAACTCTT 205 485 1000 Antisense
GTATTCGTACAGTTTCTTCCATTTT 136 453 1128 Antisense
CTTGCTTCTCTCTATGTCATGATGA 185 219 1162 Antisense
TGACCCTGACTTCATGGTATCATCC 154 569 1184 Antisense
GGACAGTGATCTAGCTCATCTCAAC 236 523 1209 Antisense
GTCTCTATGCGTGGACTCTTGTTGC 217 469 1286 Antisense
Sequence Source Affymetrix Proprietary Database