[Home] | [Total List]

[192724_at] adenylyl cyclase-associated protein

Description C18E3.6 /REP_DB=WormBase Gene ID /WP=CE27714 /TR=O02096 /GB=AAK68198.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=adenylyl cyclase-associated protein
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 94      6grp_total > 97      4grp_total > 0      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 241
1 2 3 4 range
A 135.1
(-2.2)
P 		114.1
(-3)
P 		221.7
(1.1)
P 		273.3
(3)
P 		159
B 146
(-3)
P 		159.4
(-2.4)
P 		237.5
(1.3)
P 		272.7
(3)
P 		127
C 151.7
(-3)
P 		151.5
(-3)
P 		238.1
(-0.4)
P 		354.7
(3)
P 		203
avr 144.3
(-2.9) 		141.7
(-3) 		232.4
(0.4) 		300.2
(3) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1042
1 2 3 4 5 6 range
A 172.9
(-3)
P 		211.4
(-2.7)
P 		213.3
(-2.7)
P 		407.4
(-1.5)
P 		690.4
(0.4)
P 		1096.3
(3)
P 		923
B 197.3
(-2.8)
P 		157.7
(-3)
P 		227.1
(-2.6)
P 		249.3
(-2.5)
P 		733.8
(0.3)
P 		1199.7
(3)
P 		1042
C 184
(-2.8)
P 		160.8
(-3)
P 		229.3
(-2.5)
P 		384.9
(-1.4)
P 		744.3
(1.3)
P 		976.3
(3)
P 		816
avr 184.7
(-2.9) 		176.6
(-3) 		223.2
(-2.7) 		347.2
(-1.9) 		722.8
(0.6) 		1090.8
(3) 		914
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 49.2
(1.4)
P 		24.8
(-3)
P 		58
(3)
P 		40
(-0.3)
P 		33
B 46.6
(-0.7)
P 		39.4
(-3)
P 		55
(2)
P 		58.1
(3)
P 		19
C 50.2
(-2)
P 		43.6
(-3)
P 		83
(3)
P 		59.8
(-0.5)
P 		39
avr 48.7
(-0.4) 		35.9
(-3) 		65.3
(3) 		52.6
(0.4) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 416
1 2 3 4 5 6 range
A 31.9
(-3)
P 		75.2
(-1.9)
P 		46.4
(-2.6)
P 		103.3
(-1.2)
P 		208.3
(1.5)
P 		266.9
(3)
P 		235
B 68.7
(-2.8)
P 		52.5
(-3)
P 		55.2
(-3)
P 		66
(-2.8)
P 		298.1
(0.7)
P 		447.4
(3)
P 		395
C 68.2
(-2.6)
P 		49.1
(-3)
P 		58.3
(-2.8)
P 		77.4
(-2.4)
P 		240.9
(1.1)
P 		326.8
(3)
P 		278
avr 56.3
(-2.9) 		58.9
(-2.9) 		53.3
(-3) 		82.2
(-2.4) 		249.1
(1) 		347
(3) 		294
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192724_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.849
Sequence Type Exemplar sequence
Representative Public ID C18E3.6 NCBI
Target Description C18E3.6 /REP_DB=WormBase Gene ID /WP=CE27714 /TR=O02096 /GB=AAK68198.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=adenylyl cyclase-associated protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058923(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058923 NCBI Caenorhabditis elegans C18E3.6 (C18E3.6) mRNA, complete cds. 11/11 None
SNAP00000003655 ENSEMBL cdna:SNAP chromosome:CEL140:I:4186564:4193025:1 11/11 None
GENEFINDER00000003668 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4190160:4193025:1 11/11 None
C18E3.6 ENSEMBL cdna:known chromosome:CEL140:I:4190160:4193215:1 gene:C18E3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4190159-4193025(+) 94.9 100.0
Public Domain and Genome References
Gene Title adenylyl cyclase-associated protein
Ensembl C18E3.6
Entrez Gene 266829 Entrez gene
SwissProt O02096 EMBL-EBI
WormBase CE27714 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68198 Hypothetical protein C18E3.6 [Caenorhabditis elegans] ref|NP_491324.1| C18E3.6 [Caenorhabditis elegans] 0.0
blast AAO38667 Paz/piwi domain-containing protein 1, isoform c [Caenorhabditis elegans] ref|NP_491323.2| PAZ/PIWI domain-containing family member (ppw-1) [Caenorhabditis elegans] 0.0
blast AAB52946 Paz/piwi domain-containing protein 1, isoform a [Caenorhabditis elegans] ref|NP_740835.1| PAZ/PIWI domain-containing family member (ppw-1) [Caenorhabditis elegans] 0.0
blast AAF99978 Hypothetical protein F56A6.1a [Caenorhabditis elegans] ref|NP_490758.1| F56A6.1a [Caenorhabditis elegans] 0.0
blast CAE66745 Hypothetical protein CBG12095 [Caenorhabditis briggsae] 1.0E-136
blast AAK85481 Cyclase associated protein homolog protein 1, isoform a [Caenorhabditis elegans] ref|NP_510714.1| Cyclase ASsociated protein Homolog family member (cas-1) [Caenorhabditis elegans] 4.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR001837 EMBL-EBI CAP protein 5.7E-117
Pfam IPR001837 EMBL-EBI CAP protein 4.8E-117
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 4.8E-52
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192724_AT
gggattatcggctactagtcgtttgaagaaagtcacccctgaaatgcaaactcacaaaaa
tccggtacttcgtgaggtaaatggacagatgaatcgaaaaactgaagaaagaaaggtgag
cgagaacaagaaaccggagaaaattcacgaatcgagcattttctgggatggaaagatttg
gaaagttgatcatcaagttggtaataagaatgccgtcgttgaagttacggataagaagga
atcgatttatatttacaagtgtaacgattctattatcaagatcaaaggaaaggccaacgc
aattacattggacggatgccgtaaaacttcagtcgtatttgatggtcttgttgctcaatg
tgaaatcatcaattgccaatcaattcaaattcaaactctcggagaacttccaactgtttc
gattcaaaaaaccgatggatgtcatatctatctgtcacgtgatgctttgaatgctcaaat
tgttgcatccaaatccagtgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGATTATCGGCTACTAGTCGTTTG 544 493 840 Antisense
AGTCACCCCTGAAATGCAAACTCAC 330 59 870 Antisense
GCAAACTCACAAAAATCCGGTACTT 369 317 885 Antisense
TTCACGAATCGAGCATTTTCTGGGA 673 685 983 Antisense
CGGATGCCGTAAAACTTCAGTCGTA 538 243 1152 Antisense
GTCGTATTTGATGGTCTTGTTGCTC 149 473 1171 Antisense
AAACTCTCGGAGAACTTCCAACTGT 76 127 1232 Antisense
GAACTTCCAACTGTTTCGATTCAAA 566 347 1243 Antisense
GGATGTCATATCTATCTGTCACGTG 216 515 1276 Antisense
GTCACGTGATGCTTTGAATGCTCAA 47 465 1293 Antisense
AATTGTTGCATCCAAATCCAGTGAG 269 179 1317 Antisense
Sequence Source Affymetrix Proprietary Database