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[192716_at] chromosome segregation protein like

Description C44C10.4 /REP_DB=WormBase Gene ID /WP=CE05411 /TR=Q18616 /GB=CAA93638.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=chromosome segregation protein like
Cluster 6grp_high1_10_10 > 54      6grp_total > 33      4grp_total > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 179.1
(3)
P 		67.3
(-2.1)
A 		58.3
(-2.5)
A 		47.2
(-3)
A 		132
B 152
(3)
P 		57
(-1.3)
A 		87.5
(0.1)
A 		19.8
(-3)
A 		132
C 175
(3)
P 		89.4
(-2.1)
A 		79.2
(-2.7)
A 		74
(-3)
A 		101
avr 168.7
(3) 		71.2
(-1.8) 		75
(-1.6) 		47
(-3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 90.5
(1.5)
P 		112.7
(2.8)
P 		116
(3)
P 		84.8
(1.2)
P 		69.9
(0.3)
A 		13.3
(-3)
A 		103
B 147
(2.2)
P 		75.1
(-3)
P 		158.5
(3)
P 		110.7
(-0.4)
P 		100.4
(-1.2)
P 		121.1
(0.3)
P 		83
C 145.2
(1.7)
P 		166
(3)
P 		131.8
(0.8)
P 		115.8
(-0.2)
P 		71.9
(-3)
P 		113.7
(-0.3)
P 		94
avr 127.6
(2.1) 		117.9
(1.1) 		135.4
(3) 		103.8
(-0.5) 		80.7
(-3) 		82.7
(-2.8) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 65.2
(3)
P 		14.6
(-2.2)
A 		15.2
(-2.1)
A 		6.9
(-3)
A 		58
B 48.5
(3)
P 		14.1
(-1.7)
A 		20.3
(-0.8)
A 		4.2
(-3)
A 		44
C 57.9
(3)
P 		25.7
(-1.3)
A 		27.6
(-1)
A 		12.5
(-3)
A 		45
avr 57.2
(3) 		18.1
(-1.8) 		21
(-1.4) 		7.9
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 16.7
(-0.8)
P 		40.1
(3)
P 		25.3
(0.6)
P 		21.5
(-0)
P 		21.1
(-0.1)
A 		3.2
(-3)
A 		37
B 51.2
(3)
P 		25
(-3)
P 		38.5
(0.1)
P 		29.3
(-2)
P 		40.8
(0.6)
P 		45.1
(1.6)
P 		26
C 53.8
(3)
P 		50.7
(2.4)
P 		33.5
(-1)
P 		23.3
(-3)
P 		23.3
(-3)
P 		38.1
(-0.1)
P 		31
avr 40.6
(3) 		38.6
(2.2) 		32.4
(-0.1) 		24.7
(-3) 		28.4
(-1.6) 		28.8
(-1.5) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192716_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16626
Sequence Type Exemplar sequence
Representative Public ID C44C10.4 NCBI
Target Description C44C10.4 /REP_DB=WormBase Gene ID /WP=CE05411 /TR=Q18616 /GB=CAA93638.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=chromosome segregation protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077555(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077555 NCBI Caenorhabditis elegans C44C10.4 (C44C10.4) mRNA, complete cds. 10/11 None
SNAP00000037968 ENSEMBL cdna:SNAP chromosome:CEL140:X:11693386:11695512:1 10/11 None
GENEFINDER00000037976 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11693386:11695512:1 10/11 None
C44C10.4 ENSEMBL cdna:known chromosome:CEL140:X:11693386:11695661:1 gene:C44C10.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11693385-11695317(+) 100.0 100.0
Public Domain and Genome References
Gene Title chromosome segregation protein like
Ensembl C44C10.4
Entrez Gene 183453 Entrez gene
SwissProt Q18616 EMBL-EBI
WormBase CE31442 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7059 chromosome segregation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93638 Hypothetical protein C44C10.4 [Caenorhabditis elegans] ref|NP_509956.2| C44C10.4 [Caenorhabditis elegans] 0.0
blast CAA93639 Hypothetical protein C44C10.5 [Caenorhabditis elegans] ref|NP_509955.1| C44C10.5 [Caenorhabditis elegans] 5.0E-22
blast AAK21378 High incidence of males (increased x chromosome loss) protein 1 [Caenorhabditis elegans] ref|NP_491486.1| High Incidence of Males (increased X chromosome loss) family member (him-1) [Caenorhabditis elegans] 7.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR003405 EMBL-EBI Structural maintenance of chromosome protein SMC, C-terminal 1.7E-5
Pfam IPR003395 EMBL-EBI SMC protein, N-terminal 5.4E-9
Sequence
Target Sequence 
>C. ELEGANS:192716_AT
gagtcatgcgaagtgcacgtttcaacaactttatggcacctttacaaacgtcactgagca
gaatttacgctgaaatcgcgcaggacgaggattctctcgcttttcttagaccattggacg
aggaagagccctacttggcaattgacgcatttgtgaaggaacgccacagtgagcacattt
caactcgaacgtttcacggtgggtccagaatgattgttgatttggctctcatttttgcta
tccatgagtggaaaccttcgccacttgttgtcatcgacgatatcgacaggaatttgtacc
atgaagcaagtaaaaaggttagtacatatctcgttcaatcattta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCATGCGAAGTGCACGTTTCAA 437 399 1211 Antisense
GTTTCAACAACTTTATGGCACCTTT 425 449 1229 Antisense
ATGGCACCTTTACAAACGTCACTGA 375 51 1243 Antisense
GCGCAGGACGAGGATTCTCTCGCTT 213 289 1288 Antisense
TCTCTCGCTTTTCTTAGACCATTGG 377 611 1303 Antisense
GAGCCCTACTTGGCAATTGACGCAT 190 387 1336 Antisense
GGAACGCCACAGTGAGCACATTTCA 361 529 1368 Antisense
CTCGAACGTTTCACGGTGGGTCCAG 98 3 1394 Antisense
GATTGTTGATTTGGCTCTCATTTTT 385 435 1422 Antisense
TTCGCCACTTGTTGTCATCGACGAT 403 697 1467 Antisense
AGTACATATCTCGTTCAATCATTTA 490 61 1531 Antisense
Sequence Source Affymetrix Proprietary Database