[Home] | [Total List]

[192715_s_at] serine/threonine protein phosphatase /// Ser/Thr protein phosphatase

Description T25B9.2 /REP_DB=WormBase Gene ID /WP=CE06501 /TR=Q27528 /GB=CAA94374.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster 6grp_total > 89      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 31.9
(-3)
A 		75.2
(1.3)
A 		50.5
(-1.1)
A 		91.7
(3)
A 		60
B 45.2
(-3)
A 		71.9
(3)
A 		53.4
(-1.2)
A 		49.1
(-2.1)
A 		27
C 53.8
(0.1)
A 		38.3
(-3)
A 		43.7
(-1.9)
A 		68.2
(3)
A 		30
avr 43.6
(-3) 		61.8
(1.2) 		49.2
(-1.7) 		69.7
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 60.3
(-1.2)
A 		37.1
(-3)
A 		55.1
(-1.6)
A 		45.5
(-2.3)
A 		102.2
(2.1)
P 		113.4
(3)
A 		76
B 25.6
(-1.8)
A 		38.7
(-0.2)
A 		15.7
(-3)
A 		28.4
(-1.5)
A 		59.7
(2.3)
P 		65.8
(3)
P 		50
C 25.5
(-2.5)
A 		56.5
(1)
A 		20.6
(-3)
A 		36.2
(-1.3)
A 		57.5
(1.1)
A 		74.4
(3)
P 		54
avr 37.1
(-2.3) 		44.1
(-1.5) 		30.5
(-3) 		36.7
(-2.3) 		73.1
(1.7) 		84.5
(3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 11.6
(-3)
A 		16.3
(3)
A 		13.2
(-1)
A 		13.4
(-0.7)
A 		5
B 14.4
(0.2)
A 		17.8
(3)
A 		12.4
(-1.4)
A 		10.5
(-3)
A 		7
C 17.8
(3)
A 		11
(-3)
A 		15.2
(0.7)
A 		11.5
(-2.6)
A 		7
avr 14.6
(2.3) 		15
(3) 		13.6
(0.4) 		11.8
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 11.1
(-3)
A 		13.2
(-2.4)
A 		12
(-2.7)
A 		11.5
(-2.9)
A 		30.8
(3)
P 		27.6
(2)
A 		20
B 8.9
(-1.5)
A 		12.9
(-0.4)
A 		3.8
(-3)
A 		7.5
(-1.9)
A 		24.3
(2.9)
P 		24.5
(3)
P 		21
C 9.4
(-1.7)
A 		17.2
(0.6)
A 		5.3
(-3)
A 		7.3
(-2.4)
A 		18.6
(1.1)
A 		24.9
(3)
P 		20
avr 9.8
(-2.1) 		14.4
(-0.6) 		7
(-3) 		8.8
(-2.4) 		24.6
(2.6) 		25.7
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192715_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9220
Sequence Type Exemplar sequence
Representative Public ID T25B9.2 NCBI
Target Description T25B9.2 /REP_DB=WormBase Gene ID /WP=CE06501 /TR=Q27528 /GB=CAA94374.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069640(11), NM_069591(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069640 NCBI Caenorhabditis elegans Y69E1A.4 (Y69E1A.4) mRNA, complete cds. 11/11 None
NM_069591 NCBI Caenorhabditis elegans T25B9.2 (T25B9.2) mRNA, complete cds. 11/11 None
SNAP00000037374 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10955363:10956559:1 11/11 None
GENEFINDER00000037384 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10955363:10956559:1 11/11 None
SNAP00000044111 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10750484:10751680:-1 11/11 None
GENEFINDER00000044129 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10750484:10751680:-1 11/11 None
T25B9.2 ENSEMBL cdna:known chromosome:CEL140:IV:10750181:10751680:-1 gene:T25B9.2 11/11 None
Y69E1A.4 ENSEMBL cdna:known chromosome:CEL140:IV:10955267:10956559:1 gene:Y69E1A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10955368-10956530(+) 89.74 89.74
chrIV:10750186-10751686(-) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine protein phosphatase
Ser/Thr protein phosphatase
Ensembl T25B9.2
Y69E1A.4
Entrez Gene 188880 Entrez gene
190550 Entrez gene
SwissProt Q27528 EMBL-EBI
Q9XW33 EMBL-EBI
WormBase CE06501 Wormbase
CE22811 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA22262 Hypothetical protein Y69E1A.4 [Caenorhabditis elegans] ref|NP_502041.1| Y69E1A.4 [Caenorhabditis elegans] 0.0
blast CAA94374 Hypothetical protein T25B9.2 [Caenorhabditis elegans] ref|NP_501992.1| T25B9.2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.5E-33
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.6E-33
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.6E-33
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.3E-32
Sequence
Target Sequence 
>C. ELEGANS:192715_S_AT
gttaacacttcgtatggattctatcgagaggtcaattatcgttatgatgctcaattgtac
gaatgcttccagaacatgttcaacgttttcccattctgtgctgtgattaacaatacgatt
atgtgtatgcatggaggaatcagtgagcatctgacaagtttcaatcagttttcggttttc
aaaagaccactcgagattcctgatgttggtgttctaactgatttgacatgggctgatcct
gatccgactgaaaaaggctataaaccatccgcacgtggtgcatcttttgtcttcggacca
ccagctctccgtgcatttctgaaaaagctggatcttcaaatggttatccgcggtcatcaa
gttgttgaagatggctatgaattcttcgatggtcgacgtctggtcacaattttttcggct
cc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTAACACTTCGTATGGATTCTATC 499 445 484 Antisense
GTACGAATGCTTCCAGAACATGTTC 180 459 540 Antisense
GAACATGTTCAACGTTTTCCCATTC 518 351 555 Antisense
TTTCCCATTCTGTGCTGTGATTAAC 606 669 570 Antisense
AAGACCACTCGAGATTCCTGATGTT 52 155 666 Antisense
GCTGATCCTGATCCGACTGAAAAAG 96 297 715 Antisense
AAACCATCCGCACGTGGTGCATCTT 667 125 745 Antisense
TGGTGCATCTTTTGTCTTCGGACCA 249 553 759 Antisense
CAGCTCTCCGTGCATTTCTGAAAAA 514 203 785 Antisense
TCTTCGATGGTCGACGTCTGGTCAC 589 617 866 Antisense
GTCTGGTCACAATTTTTTCGGCTCC 342 471 881 Antisense
Sequence Source Affymetrix Proprietary Database