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[192713_s_at] Yeast hypothetical YIK9 protein like

Description F12F6.6 /REP_DB=WormBase Gene ID /WP=CE05594 /TR=Q19371 /GB=CAA97788.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast hypothetical YIK9 protein like
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 03      4grp_highest_8_8 > 01      4grp_high_8_8 > 53      6grp_highest_nonorm > 21      6grp_total > 24      4grp_total > 50      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1000
1 2 3 4 range
A 1538.7
(1.6)
P 		1680.3
(3)
P 		1523.7
(1.4)
P 		1083.1
(-3)
P 		597
B 1279.8
(-3)
P 		1779
(1.4)
P 		1967.9
(3)
P 		1349.6
(-2.4)
P 		688
C 1280.6
(-1.9)
P 		2082.9
(3)
P 		1816.4
(1.4)
P 		1091.4
(-3)
P 		992
avr 1366.4
(-1.3) 		1847.4
(3) 		1769.3
(2.3) 		1174.7
(-3) 		673

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1045
1 2 3 4 5 6 range
A 1658.8
(3)
P 		1441.3
(1.3)
P 		1061.4
(-1.6)
P 		1109.9
(-1.2)
P 		956
(-2.4)
P 		881.4
(-3)
P 		777
B 1578.5
(3)
P 		1438.2
(2)
P 		1485.7
(2.4)
P 		1130.9
(-0)
P 		692.4
(-3)
P 		863.7
(-1.8)
P 		886
C 1737.8
(3)
P 		1384.4
(0.9)
P 		1290.2
(0.3)
P 		1088.2
(-0.9)
P 		994.6
(-1.4)
P 		735.6
(-3)
P 		1002
avr 1658.4
(3) 		1421.3
(1.3) 		1279.1
(0.3) 		1109.7
(-1) 		881
(-2.6) 		826.9
(-3) 		832
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 475
1 2 3 4 range
A 560.2
(3)
P 		364.7
(0.1)
P 		398.3
(0.6)
P 		158.5
(-3)
P 		402
B 408.1
(1.3)
P 		439.4
(2.4)
P 		456
(3)
P 		287.6
(-3)
P 		168
C 423.9
(0.2)
P 		598.9
(2.5)
P 		633.1
(3)
P 		184
(-3)
P 		449
avr 464.1
(2.3) 		467.7
(2.4) 		495.8
(3) 		210
(-3) 		286

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 430
1 2 3 4 5 6 range
A 305.8
(-1.2)
P 		512.6
(3)
P 		231.2
(-2.7)
P 		281.5
(-1.7)
P 		288.5
(-1.5)
P 		214.6
(-3)
P 		298
B 549.2
(3)
P 		478.7
(1.4)
P 		360.8
(-1.2)
P 		299.5
(-2.6)
P 		281.3
(-3)
P 		322.1
(-2.1)
P 		268
C 644.1
(3)
P 		422.4
(-0.1)
P 		328.4
(-1.5)
P 		218.8
(-3)
P 		321.9
(-1.5)
P 		246.2
(-2.6)
P 		425
avr 499.7
(3) 		471.2
(2.3) 		306.8
(-1.8) 		266.6
(-2.9) 		297.2
(-2.1) 		261
(-3) 		239
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192713_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10123
Sequence Type Exemplar sequence
Representative Public ID F12F6.6 NCBI
Target Description F12F6.6 /REP_DB=WormBase Gene ID /WP=CE05594 /TR=Q19371 /GB=CAA97788.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Yeast hypothetical YIK9 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069777(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069777 NCBI Caenorhabditis elegans yeast SEC homolog family member (sec-24.1) (sec-24.1) mRNA, complete cds. 11/11 None
SNAP00000024853 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11562402:11566161:-1 11/11 None
GENEFINDER00000024861 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11562402:11566161:-1 11/11 None
F12F6.6 ENSEMBL cdna:known chromosome:CEL140:IV:11561949:11566161:-1 gene:F12F6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11562407-11566167(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast hypothetical YIK9 protein like
Gene Symbol sec-24.1
Ensembl F12F6.6
Entrez Gene 178078 Entrez gene
SwissProt Q19371 EMBL-EBI
WormBase CE05594 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:252662_AT sec23/sec24 transport family protein at
CANINE_2:CFA.21369.1.S1_S_AT similar to SEC24-related protein C cfa
CANINE_2:CFAAFFX.22893.1.S1_S_AT similar to SEC24-related protein C cfa
DROSOPHILA_2:1628938_AT dm
DROSGENOME1:141363_AT dm
CHICKEN:GGA.8934.1.S1_AT similar to SEC24-related protein C; protein transport protein SEC24C; SEC24 (S. cerevisiae) related gene family, member C gga
CHICKEN:GGAAFFX.3246.1.S1_S_AT similar to SEC24-related protein C; protein transport protein SEC24C; SEC24 (S. cerevisiae) related gene family, member C gga
HU35KSUBC:RC_AA088509_S_AT SEC24 related gene family, member C (S. cerevisiae) hs
HUGENEFL:D38555_AT SEC24 related gene family, member C (S. cerevisiae) hs
HG-U133A:202361_AT SEC24 related gene family, member C (S. cerevisiae) hs
HG-U133_PLUS_2:202361_AT SEC24 related gene family, member C (S. cerevisiae) hs
HG-FOCUS:202361_AT SEC24 related gene family, member C (S. cerevisiae) hs
HG-U133A_2:202361_AT SEC24 related gene family, member C (S. cerevisiae) hs
U133_X3P:G4758633_3P_X_AT SEC24 related gene family, member C (S. cerevisiae) hs
U133_X3P:G4758633_3P_AT SEC24 related gene family, member C (S. cerevisiae) hs
HG-U95AV2:38117_AT SEC24 related gene family, member C (S. cerevisiae) hs
MOUSE430_2:1430250_AT SEC24 related gene family, member C (S. cerevisiae) mm
MOE430B:1430250_AT SEC24 related gene family, member C (S. cerevisiae) mm
MU11KSUBA:AA175517_S_AT SEC24 related gene family, member C (S. cerevisiae) mm
MG-U74AV2:99617_AT SEC24 related gene family, member C (S. cerevisiae) mm
MOE430A:1452147_AT SEC24 related gene family, member C (S. cerevisiae) mm
MOUSE430A_2:1452147_AT SEC24 related gene family, member C (S. cerevisiae) mm
MOUSE430_2:1452147_AT SEC24 related gene family, member C (S. cerevisiae) mm
MU19KSUBC:TC39541_AT SEC24 related gene family, member C (S. cerevisiae), mRNA (cDNA clone IMAGE:4950601) mm
YEAST_2:1777387_AT Member of the Sec24p family; forms a complex, with Sec23p, that is involved in sorting of Pma1p into COPII vesicles; peripheral ER membrane protein; potential Cdc28p substrate Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
30127 COPII vesicle coat inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA97788 Hypothetical protein F12F6.6 [Caenorhabditis elegans] ref|NP_502178.1| yeast SEC homolog family member (sec-24.1) [Caenorhabditis elegans] 0.0
blast CAE62099 Hypothetical protein CBG06129 [Caenorhabditis briggsae] 0.0
blast XP_392952 PREDICTED: similar to ENSANGP00000012422 [Apis mellifera] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006895 EMBL-EBI Sec23/Sec24 zinc finger 1.8E-20
Pfam IPR007123 EMBL-EBI Gelsolin region 6.3E-18
Pfam IPR006900 EMBL-EBI Sec23/Sec24 helical domain 2.3E-38
Pfam IPR006896 EMBL-EBI Sec23/Sec24 trunk domain 1.4E-111
Sequence
Target Sequence 
>C. ELEGANS:192713_S_AT
cccacttggacaactgattcttcctgaatctctgaaattgatgccgctctatgtgaactc
tattttgaaaaatgatgcgatcagtggaggaagtgaaatgacagtcgacgacaaagtgtg
gcagatggaattgatccgtgggctacgaactgaaaatgtcatgcctcttatttatccaag
agttatgccaatctctgatctacaaatcaatgatactgaagaaatgaaggatcttccaaa
acctgttagagcgagttctgagttcctggaaaattcgaaagcctatattattgataacgg
tgttattctgtttgtctgggttggctctgcatgcccccagacatgggttcaagacgtgtt
tggtgttggtgctacaaatcaaattgataccgagagtggaacaattccggaaaaagacaa
tggtcattcacgtgctcttcgtcgtgcaattcaacttttgccacgtgggatccgagagcg
aaaaacgttcgttgtcgtggaaaaaagcggccttgagccatggatgaagaaatttttagt
ggaagacaaggctggtcctgctaatatgtcatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCACTTGGACAACTGATTCTTCCT 216 259 2769 Antisense
GAATCTCTGAAATTGATGCCGCTCT 343 329 2794 Antisense
ATGCCGCTCTATGTGAACTCTATTT 651 41 2809 Antisense
AATGTCATGCCTCTTATTTATCCAA 389 163 2923 Antisense
GAGTTATGCCAATCTCTGATCTACA 228 399 2948 Antisense
TAGAGCGAGTTCTGAGTTCCTGGAA 663 651 3015 Antisense
GTTATTCTGTTTGTCTGGGTTGGCT 484 447 3070 Antisense
GCATGCCCCCAGACATGGGTTCAAG 582 297 3097 Antisense
AGACAATGGTCATTCACGTGCTCTT 692 71 3183 Antisense
TGCTCTTCGTCGTGCAATTCAACTT 443 579 3201 Antisense
GGCTGGTCCTGCTAATATGTCATAC 60 541 3318 Antisense
Sequence Source Affymetrix Proprietary Database