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[192709_at] haloacid dehalogenase-like hydrolase

Description F09C3.2 /REP_DB=WormBase Gene ID /WP=CE09277 /TR=O17773 /GB=CAB07180.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=haloacid dehalogenase-like hydrolase
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 20      6grp_total > 27      4grp_total > 21      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2161
1 2 3 4 range
A 2790.3
(1.2)
P 		2397.6
(-0.1)
P 		1462.8
(-3)
P 		3365.8
(3)
P 		1903
B 2819.3
(0.9)
P 		2163.1
(-1)
P 		1431.5
(-3)
P 		3592.7
(3)
P 		2161
C 2774.7
(1.6)
P 		2158.2
(-0.6)
P 		1469.1
(-3)
P 		3189.8
(3)
P 		1721
avr 2794.8
(1.2) 		2239.6
(-0.6) 		1454.5
(-3) 		3382.8
(3) 		1928

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1181
1 2 3 4 5 6 range
A 1660.3
(3)
P 		1452
(1.8)
P 		835.3
(-1.6)
P 		851.3
(-1.6)
P 		595.6
(-3)
P 		1222.9
(0.5)
P 		1065
B 1762
(3)
P 		1252
(-0)
P 		878.1
(-2.2)
P 		746.8
(-3)
P 		779.4
(-2.8)
P 		958.1
(-1.8)
P 		1015
C 1776.9
(3)
P 		1147.7
(-0.5)
P 		1018.6
(-1.2)
P 		701.6
(-3)
P 		768.6
(-2.6)
P 		1065.3
(-1)
P 		1075
avr 1733.1
(3) 		1283.9
(0.4) 		910.7
(-1.8) 		766.6
(-2.7) 		714.5
(-3) 		1082.1
(-0.8) 		1019
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 684
1 2 3 4 range
A 1015.9
(3)
P 		520.5
(-1.7)
P 		382.4
(-3)
P 		492.7
(-2)
P 		634
B 899.1
(3)
P 		534.2
(-0.9)
P 		331.7
(-3)
P 		765.6
(1.6)
P 		567
C 918.5
(3)
P 		620.5
(-1.4)
P 		512
(-3)
P 		537.9
(-2.6)
P 		407
avr 944.5
(3) 		558.4
(-1.3) 		408.7
(-3) 		598.7
(-0.9) 		536

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 518
1 2 3 4 5 6 range
A 306.1
(-0.7)
P 		516.4
(3)
P 		181.9
(-3)
P 		215.9
(-2.4)
P 		179.7
(-3)
P 		297.7
(-0.9)
P 		337
B 613.1
(3)
P 		416.7
(0.2)
P 		213.2
(-2.8)
P 		197.8
(-3)
P 		316.7
(-1.3)
P 		357.3
(-0.7)
P 		415
C 658.6
(3)
P 		350.2
(-0.6)
P 		259.2
(-1.6)
P 		141.1
(-3)
P 		248.7
(-1.8)
P 		356.6
(-0.5)
P 		518
avr 525.9
(3) 		427.8
(1.3) 		218.1
(-2.4) 		184.9
(-3) 		248.4
(-1.9) 		337.2
(-0.3) 		341
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192709_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1414
Sequence Type Exemplar sequence
Representative Public ID F09C3.2 NCBI
Target Description F09C3.2 /REP_DB=WormBase Gene ID /WP=CE09277 /TR=O17773 /GB=CAB07180.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=haloacid dehalogenase-like hydrolase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061092(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061092 NCBI Caenorhabditis elegans F09C3.2 (F09C3.2) mRNA, complete cds. 11/11 None
GENEFINDER00000039671 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14280251:14282323:-1 11/11 None
F09C3.2 ENSEMBL cdna:known chromosome:CEL140:I:14280075:14282323:-1 gene:F09C3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14280181-14282254(-) 100.0 100.0
Public Domain and Genome References
Gene Title haloacid dehalogenase-like hydrolase
Ensembl F09C3.2
Entrez Gene 184226 Entrez gene
SwissProt O17773 EMBL-EBI
WormBase CE36126 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07180 Hypothetical protein F09C3.2 [Caenorhabditis elegans] ref|NP_493493.2| F09C3.2 [Caenorhabditis elegans] 1.0E-140
blast CAB07180 Hypothetical protein F09C3.2 [Caenorhabditis elegans] ref|NP_493493.2| F09C3.2 [Caenorhabditis elegans] 1.0E-123
blast CAE71781 Hypothetical protein CBG18783 [Caenorhabditis briggsae] 1.0E-118
blast CAE71781 Hypothetical protein CBG18783 [Caenorhabditis briggsae] 1.0E-114
blast CAE70331 Hypothetical protein CBG16864 [Caenorhabditis briggsae] 1.0E-39
blast CAE70331 Hypothetical protein CBG16864 [Caenorhabditis briggsae] 1.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 4.0E-34
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 1.0E-35
Sequence
Target Sequence 
>C. ELEGANS:192709_AT
atgtggatgccatacgcgactacaaccgtccgattgttggaagccgccaccaatcttcgt
gtcgggccggctatctacaagactttgggcgttgatccggttgctggaaagaccttcgga
ctcctaccagttgaagccgacgcgattgtccagggatgtgtcccagaagcatctccaggt
gagatgtcaccagtctgtgatatgccagcgctgttcaccacgctcaagtcgatggggatc
aagattgccgtgtgcaccgctgattccagagcagctactatggatcagatgaacaagatg
aatgtgataccattccttgatgacatcatttgcggaaatgatgttggcatcgtgccaaaa
ccatccccacactgtgcgattcagatttgcaagcgattgggcgtcgagttgaaggaaacc
ttgatggtcggcgacacgattgccgacttgaaaatgggcaaaattgcgggtctacgagca
agtgtggctgtgatgacgggcgtcggaacgcgtgacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGGATGCCATACGCGACTACAA 679 49 85 Antisense
GCGACTACAACCGTCCGATTGTTGG 65 287 100 Antisense
AAGACTTTGGGCGTTGATCCGGTTG 336 153 163 Antisense
CGGACTCCTACCAGTTGAAGCCGAC 177 241 201 Antisense
GGGATGTGTCCCAGAAGCATCTCCA 67 497 237 Antisense
TGTGATATGCCAGCGCTGTTCACCA 101 557 280 Antisense
GTTCACCACGCTCAAGTCGATGGGG 198 443 297 Antisense
GGATCAAGATTGCCGTGTGCACCGC 569 511 320 Antisense
TGTGCACCGCTGATTCCAGAGCAGC 655 555 335 Antisense
CATCCCCACACTGTGCGATTCAGAT 391 211 446 Antisense
TGACGGGCGTCGGAACGCGTGACAC 263 571 578 Antisense
Sequence Source Affymetrix Proprietary Database